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H1-18-all-fractions_k255_2814015_6

Organism: H1-18-all-fractions_conc_125

near complete RP 31 / 55 MC: 3 BSCG 47 / 51 MC: 3 ASCG 12 / 38 MC: 3
Location: comp(5040..5705)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 / NBRC 15066 / NRRL 15764) RepID=K0JR80_SACES similarity UNIREF
DB: UNIREF100
  • Identity: 65.7
  • Coverage: 198.0
  • Bit_score: 255
  • Evalue 2.80e-65
Putative RNA polymerase sigma factor {ECO:0000313|EMBL:EWC64638.1}; TaxID=909613 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinokineospora.;" source="Actinokineospora spheciospongiae.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 61.9
  • Coverage: 197.0
  • Bit_score: 258
  • Evalue 8.00e-66
RNA polymerase, sigma-24 subunit, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 65.7
  • Coverage: 198.0
  • Bit_score: 255
  • Evalue 8.00e-66

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Taxonomy

Actinokineospora spheciospongiae → Actinokineospora → Pseudonocardiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 666
ATGGATTGGCACGATGAACACCGTGCCAGGAGCAGGACGACCCTCGAAGCGGGGTGGAAAGCGGTGACCGAGCTGCAGACCACAAGTGTGGTCAAACCTTGGGAGGAGCTCGAGGGGCGGGACCGGCACGCCGCATGCATGTTGGCCGCGCGAGACGGAGACAGGGAGGCGTTCGACGCGTTGATCACCGACCTCGCCCCGCTCGTGTGGCACGTGGCCCGCGGCAGCGGTCTGGACCGAACTACGGCGGAAGACGTGGTCCAGACCGTGTGGCTCGCCCTGCTGCGCCATCTCCACCGGCTCACCGAGCCGAGGGCGTTGGCCGGCTGGCTGATCACCACCACCCGCCGCGAGTCCTACCGGGTGCAGCACCGCGCGAACGGACACCTCGAACTGTCGCCGGAGCTGGCCGAGCAGACGGCCACCACGGATCCGTCCCCGGAGCACGAGGTGCTCCGCACGGAGCGCGACCGCGCGCTGTGGTCGGCGTTCCACAAGCTCTCGCAGCGCTGTCAGGAGCTGCTGCGGCTCACCGTGCTCGCCGGGCGCGCGGAATACCGCACGGTCGCGGAGGCCCTCCACATGCCGCACGGAAGTATCGGACCAACACGAGGGCGGTGCCTGAACAACCTGCGCTCGCTGTACAACGGGGACAGTGGATCATGA
PROTEIN sequence
Length: 222
MDWHDEHRARSRTTLEAGWKAVTELQTTSVVKPWEELEGRDRHAACMLAARDGDREAFDALITDLAPLVWHVARGSGLDRTTAEDVVQTVWLALLRHLHRLTEPRALAGWLITTTRRESYRVQHRANGHLELSPELAEQTATTDPSPEHEVLRTERDRALWSAFHKLSQRCQELLRLTVLAGRAEYRTVAEALHMPHGSIGPTRGRCLNNLRSLYNGDSGS*