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H2-16-all-fractions_k255_1705927_4

Organism: H2-16-all-fractions_metab_57

partial RP 27 / 55 MC: 3 BSCG 25 / 51 MC: 5 ASCG 9 / 38 MC: 1
Location: comp(6580..7143)

Top 3 Functional Annotations

Value Algorithm Source
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. (strain SKA58).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 54.3
  • Coverage: 175.0
  • Bit_score: 177
  • Evalue 1.50e-41
ligT; 2'-5' RNA ligase (EC:6.5.1.-) similarity KEGG
DB: KEGG
  • Identity: 49.1
  • Coverage: 175.0
  • Bit_score: 164
  • Evalue 1.60e-38
2''''-5'''' RNA ligase n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD0D36 similarity UNIREF
DB: UNIREF100
  • Identity: 54.2
  • Coverage: 177.0
  • Bit_score: 185
  • Evalue 4.00e-44

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Taxonomy

Sphingomonas sp. SKA58 → Sphingomonas → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 564
ATGCATCGCCTGTTCGTCGCCATCCGCCCGCCCGAAGCGATCCGCGACCTCCTCATCGATGCGATGGACGACAGCCCCGAGTTCCGCTGGCAGGATGAGGAGCAGCTGCACCTGACCCTGCGCTTCGTCGGCGAAGTCGATCGGCCCGTTGGCGACGATCTCGCGAGCGCGCTCAGCGGCGTCCGCGCCGCGCGCTTCTCTGCGCAGATCGTCGACGTCGGCCGCTTCGAGCAGCGCAACTCCGGTGCGTTGTGGGCGGGAGTGGAACCGAAGGAGCCGCTCGCCGCGCTCGCCGCAAAGGTCGAGCGCGTCTGCCAGTCCGTCGGCCTCGAGCCCGAGCGCCGCGCCTATCACCCGCACATCACGCTCGCTCGCTGGAAAGGCCGGCGAACGAGAGAGGTGCAGAGCTTCCTCGAACGCAAGCGCGGGCTTGTCTCCGACGCCTGGGAGGTCGACTCCTTCGTCCTCTTCGAAAGCCGCCTCTCCCGCCACGGCGCGCATTATGAGGAGGTGGCCACCTATCCGCTGATGTGGGCGCTTCCCAAGGCTGATCGCTCACCGTAG
PROTEIN sequence
Length: 188
MHRLFVAIRPPEAIRDLLIDAMDDSPEFRWQDEEQLHLTLRFVGEVDRPVGDDLASALSGVRAARFSAQIVDVGRFEQRNSGALWAGVEPKEPLAALAAKVERVCQSVGLEPERRAYHPHITLARWKGRRTREVQSFLERKRGLVSDAWEVDSFVLFESRLSRHGAHYEEVATYPLMWALPKADRSP*