ggKbase home page

S3-18-all-fractions_k255_1032032_10

Organism: S3-18-all-fractions_metab_conc_12

near complete RP 48 / 55 MC: 3 BSCG 50 / 51 MC: 2 ASCG 14 / 38 MC: 2
Location: 10362..11102

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 46.2
  • Coverage: 182.0
  • Bit_score: 136
  • Evalue 5.10e-29
RNA polymerase sigma factor id=2697544 bin=GWF1_Xanthomonadales_69_6 species=Pseudoxanthomonas spadix genus=Pseudoxanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria similarity UNIREF
DB: UNIREF100
  • Identity: 42.3
  • Coverage: 194.0
  • Bit_score: 130
  • Evalue 2.00e-27
RNA polymerase ECF-type sigma factor similarity KEGG
DB: KEGG
  • Identity: 43.1
  • Coverage: 204.0
  • Bit_score: 129
  • Evalue 9.70e-28

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Lysobacter capsici → Lysobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 741
ATGGTAGCCGACCGCGTCGTCGACGTGTCGCAGGAAACGGGTGGGCAGCGCCAGCCCGCGCAGCTGGTCTCGCGTCGAGGCGAATGTGCTGCGACACCGCCATCCGACATGGCGCGCCGCCTAACGCCTTACGTGTGGGAGGCGCGTGACGGCGACGCCGCGGCGTTCGAGCGACTGGTCGAGCTGACGCACGGAATCGTCACGGCGATCGCGGTCGCGTTCCTGCGGGACGCCGACCTCGGTGCCGACGTCGCCCAGGATGTGTTCCTCGCCGCCTGGCGCGGCATCGGCGATCTGCGCCACCCCGAAAGCTTTCTCCCGTGGCTCCGCCAGCTCACTCGGAACAGAGCGCGCGAGGTGCTGCGCATGCGCGTTCGGCGGCGCGGGCACCTCTCCCTCTGCCCGAGAAGCGCCGAGGGAGAAGACCCGACGACGGCGGTGCCGGACCCTGGCCCGTCGCCGGTCGACGCGATCATCGCCGCGGAGGACCGTGCGGCGAAGTCGGCCACCCTGGGTGCCCTGACCGAGGCGATTGCCGCACTCCCGGCCGCCAGCCGACAGGTCTTCCTCCTCTACTACGGCGCGCGACACTCGACGCCCGAGGTGGCCCGGCAGCTCGACCTCAGCGCCGACGCGGTGCGGCAGCGACTCTCCCGCGCCCGAGCCCAACTCCGGGCCGCCCTCGGCACGCACGCGTTAGGCAACGATGCGCCGCGGAACGCCATTGCCTCGTACCGGTGA
PROTEIN sequence
Length: 247
MVADRVVDVSQETGGQRQPAQLVSRRGECAATPPSDMARRLTPYVWEARDGDAAAFERLVELTHGIVTAIAVAFLRDADLGADVAQDVFLAAWRGIGDLRHPESFLPWLRQLTRNRAREVLRMRVRRRGHLSLCPRSAEGEDPTTAVPDPGPSPVDAIIAAEDRAAKSATLGALTEAIAALPAASRQVFLLYYGARHSTPEVARQLDLSADAVRQRLSRARAQLRAALGTHALGNDAPRNAIASYR*