ggKbase home page

13_1_20cm_full_scaffold_367_2

Organism: 13_1_20cm_UNK

megabin RP 54 / 55 MC: 54 BSCG 51 / 51 MC: 51 ASCG 38 / 38 MC: 38
Location: comp(809..1342)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase ECF-type sigma factor n=1 Tax=Paenibacillus dendritiformis C454 RepID=H3SNR7_9BACL similarity UNIREF
DB: UNIREF100
  • Identity: 34.0
  • Coverage: 162.0
  • Bit_score: 99
  • Evalue 2.70e-18
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RBG_16_RIF_CHLX_72_14_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 39.8
  • Coverage: 176.0
  • Bit_score: 105
  • Evalue 9.10e-20
RNA polymerase sigma70 factor similarity KEGG
DB: KEGG
  • Identity: 37.0
  • Coverage: 173.0
  • Bit_score: 97
  • Evalue 5.00e-18

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

RBG_16_RIF_CHLX_72_14_curated → RIF-CHLX → Bacteria

Sequences

DNA sequence
Length: 534
ATGGGCGGAGTGAGCGACGACCAGGCGGAACGCATTGCTCGGGCGAAGGCCGGCGACGCGCGCGCCTTCGAGGAGCTGCTCGCGCCGTTGGTCGGCCCGGCGTTCCGGCTGGCGATGACGATGCTGAATGACAGAGGTGCGGCGGAGGATGCGGTGCAGGAGTCTGCCCTGAAGGCCTGGCGCCACCTCGGCCAGTTTCGCTCCGGGTCCTCACTACGTGCCTGGGTCCTCACCATCGTCGCCAACGAGTGCCGCAGCGTGCGGCGGGCGCGTTGGTGGCAGGTGCAGCGCCTGGCCGAGATCGTGCGGCGCCCGGAGCGCGACGACCGGTGGGCCGACCGGATGGACCTCGACGCCGCGCTCGACCGGTTGCCCCAGCACCACATCGCGATCCTGTCGCTCTACTACCACCTCGACCTTCCGATCGACGAGGTGGCGCGGGTGCTCGGCTGCTCGGAAGGGGCCGCACGCCAACGCATCCACCGGGCGCTCGCCGCGCTCCGCCCAGTGATGACGCTGGAGACGAACGGATGA
PROTEIN sequence
Length: 178
MGGVSDDQAERIARAKAGDARAFEELLAPLVGPAFRLAMTMLNDRGAAEDAVQESALKAWRHLGQFRSGSSLRAWVLTIVANECRSVRRARWWQVQRLAEIVRRPERDDRWADRMDLDAALDRLPQHHIAILSLYYHLDLPIDEVARVLGCSEGAARQRIHRALAALRPVMTLETNG*