ggKbase home page

13_1_20cm_full_scaffold_60_8

Organism: 13_1_20cm_UNK

megabin RP 54 / 55 MC: 54 BSCG 51 / 51 MC: 51 ASCG 38 / 38 MC: 38
Location: 8327..8875

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Frankia sp. (strain EuI1c) RepID=E3J9T6_FRASU similarity UNIREF
DB: UNIREF100
  • Identity: 55.9
  • Coverage: 188.0
  • Bit_score: 198
  • Evalue 7.50e-48
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 58.5
  • Coverage: 188.0
  • Bit_score: 208
  • Evalue 1.00e-50
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 55.9
  • Coverage: 188.0
  • Bit_score: 198
  • Evalue 2.10e-48

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

RBG_19FT_COMBO_Actinobacteria_70_19_curated → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 549
ATGGAGCTCGTCGAGCGCTACCACGCCTCGATGGTGCGGGTGGCGCGGACCTTCGTGGCGAGCGACGCAGTCGCCCAGGAGGTCGCCCAGGAGGCGTGGCTCGGGGTCCTGACCGGGATCGATCGCTTCGAGGGCCGCTCCTCGCTCAAGACCTGGATCTTCCGCATCCTCGTGAACAGGGCCCGAACGAGGGGGGCGCGCGAGGCCCGCAGCGTGCCGTTCACGTCGCTCGAGCGCGAGGAGGGCGAGACCGTCGACCCCGAGCGCTTCCTCTCCGACGGCGCCTGGGGATCGCCGCCCCGGCCATGGGAGGGGCAGCCCGAGGAGCGGCTGCTCGCGTCCGAGACACGCGACGTGATCCGTCGCGCGATCGACGCCCTGCCGCTGGCGCAGCGAAGGGTGATCGACCTGCGCGACGTCGAGGGCCTGTCGTCCGACGAGGTGGTGGAGCTCCTCGACCTGACCGAGGTGAACCAGCGGGTCCTTCTCCATCGCGCGCGGGCGAAGGTCCGCCAGGCGCTCGAGGACTACCTCGGGGGTGCGCGGTGA
PROTEIN sequence
Length: 183
MELVERYHASMVRVARTFVASDAVAQEVAQEAWLGVLTGIDRFEGRSSLKTWIFRILVNRARTRGAREARSVPFTSLEREEGETVDPERFLSDGAWGSPPRPWEGQPEERLLASETRDVIRRAIDALPLAQRRVIDLRDVEGLSSDEVVELLDLTEVNQRVLLHRARAKVRQALEDYLGGAR*