ggKbase home page

13_1_20cm_full_scaffold_6109_7

Organism: 13_1_20cm_UNK

megabin RP 54 / 55 MC: 54 BSCG 51 / 51 MC: 51 ASCG 38 / 38 MC: 38
Location: 3678..4298

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2B7X2_STRRD similarity UNIREF
DB: UNIREF100
  • Identity: 33.7
  • Coverage: 172.0
  • Bit_score: 87
  • Evalue 2.10e-14
sigma-70 family RNA polymerase sigma factor Tax=RBG_16_Actinobacteria_68_12_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 53.8
  • Coverage: 184.0
  • Bit_score: 207
  • Evalue 2.00e-50
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 33.7
  • Coverage: 172.0
  • Bit_score: 87
  • Evalue 6.00e-15

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

RBG_16_Actinobacteria_68_12_curated → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 621
ATGGAAGCTGCTCGAGACGATGGCGAAGCGGCTGCGCGCGGCCCAGCAGCGCTGACCGCCGAGCTCACCGACGCTCGGCTCGTCGCGCAGTGCCGGAGCGGTGACGAGCAGGCGTGGCGCTCGCTCGTCGAACGGTTCTCGCGCTACGTCTACGCAATCTGTATCCAGGCGTTCCGCCTGCCCGAGGCCGATGCCGAGGATGTCTTCCAGGAGGTATTCGCTCGCGTGTACGAGCGGCTCGAGACCCTGCGTGACGACGAAGCCGTGCGCCCTTGGATCGGTCAGCTCACCCGCCGCCTCTGCATCGACCGCCTCCGCGCCGGCTCGCGTGAGACCGTCGAGGACGCGGACGATCTGAGCGAGATCCCCGCCGACGACGTCCTCTCGCAGCTCGAGGAAGCCTTCGACATCCATGACGCCCTGGCGGCGCTGCCGGAAAACTGCCGCGAGATCCTCGACCGCTTCTTCGCCCGCGATGAGAGCTACCGGACGATCGGCGAGGCCCTCGAGCTGCCGGCCGGGACGATCGCGAGCCGGATCTCGCGCTGCCTCGACAAGCTTCGCGATGCATTCGAGGGAAGAAATGCGGCCCCCGGCCCGTCCAGTGAGCAGGTGACGTGA
PROTEIN sequence
Length: 207
MEAARDDGEAAARGPAALTAELTDARLVAQCRSGDEQAWRSLVERFSRYVYAICIQAFRLPEADAEDVFQEVFARVYERLETLRDDEAVRPWIGQLTRRLCIDRLRAGSRETVEDADDLSEIPADDVLSQLEEAFDIHDALAALPENCREILDRFFARDESYRTIGEALELPAGTIASRISRCLDKLRDAFEGRNAAPGPSSEQVT*