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OR_08082017_2m_0_2um_scaffold_46

Search features with annotation key words

Displaying items 1-30 of 82 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
OR_08082017_2m_0_2um_scaffold_46_1
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2..364)
-----------------
DNA (363bp)
protein (121aa)
bilirubin oxidase (EC:1.3.3.5)
Bilirubin oxidase {ECO:0000313|EMBL:ACX95138.1}; EC=1.3.3.5 {ECO:0000313|EMBL:ACX95138.1};; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
Bilirubin oxidase n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KXC4_HALNC
OR_08082017_2m_0_2um_scaffold_46_2
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(645..1322)
-----------------
DNA (678bp)
protein (226aa)
H+-transporting two-sector ATPase, gamma subunit n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21Z98_RHOFD
H+-transporting two-sector ATPase subunit gamma
H+-transporting two-sector ATPase, gamma subunit {ECO:0000313|EMBL:ABD68905.1}; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
OR_08082017_2m_0_2um_scaffold_46_3
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1319..2872)
-----------------
DNA (1554bp)
protein (518aa)
ATP synthase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01346};; ATP synthase F1 sector subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; F-ATPase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
ATP synthase subunit alpha n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6A9Q8_9PROT
ATP synthase subunit alpha
OR_08082017_2m_0_2um_scaffold_46_4
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2865..3656)
-----------------
DNA (792bp)
protein (264aa)
ATP synthase subunit b n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AF83_9PROT
H+-transporting two-sector ATPase, B/B' subunit
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
OR_08082017_2m_0_2um_scaffold_46_5
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3660..3941)
-----------------
DNA (282bp)
protein (94aa)
ATP synthase subunit c n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B1G2_9PROT
ATP synthase subunit c {ECO:0000256|SAAS:SAAS00242778}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
ATP synthase subunit c
OR_08082017_2m_0_2um_scaffold_46_6
Nitrosomonas sp. Is79A3, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3971..4651)
-----------------
DNA (681bp)
protein (227aa)
ATP synthase subunit a n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GEQ7_NITSI
ATP synthase subunit a
ATP synthase subunit a {ECO:0000256|HAMAP-Rule:MF_01393, ECO:0000256|RuleBase:RU000483}; ATP synthase F0 sector subunit a {ECO:0000256|HAMAP-Rule:MF_01393}; F-ATPase subunit 6 {ECO:0000256|HAMAP-Rule:MF_01393}; TaxID=261292 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas sp. (strain Is79A3).;"
OR_08082017_2m_0_2um_scaffold_46_7
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4641..4976)
-----------------
DNA (336bp)
protein (112aa)
F1/F0 ATPase, Methanosarcina type subunit 2 n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AJ13_9PROT
F1/F0 ATPase, Methanosarcina type subunit 2
F1/F0 ATPase, Methanosarcina type subunit 2 {ECO:0000313|EMBL:BAN34539.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
OR_08082017_2m_0_2um_scaffold_46_8
Nitrosomonas sp. Is79A3, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4969..5310)
-----------------
DNA (342bp)
protein (114aa)
F0F1-ATPase subunit n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GEQ5_NITSI
F0F1-ATPase subunit
F0F1-ATPase subunit {ECO:0000313|EMBL:AEI99948.1}; TaxID=261292 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas sp. (strain Is79A3).;"
OR_08082017_2m_0_2um_scaffold_46_9
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5303..5707)
-----------------
DNA (405bp)
protein (135aa)
Alternate F1F0 ATPase, F1 subunit epsilon n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AF87_9PROT
alternate F1F0 ATPase, F1 subunit epsilon
Alternate F1F0 ATPase, F1 subunit epsilon {ECO:0000313|EMBL:BAN34541.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
OR_08082017_2m_0_2um_scaffold_46_10
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5682..7157)
-----------------
DNA (1476bp)
protein (492aa)
F0F1 ATP synthase subunit beta (EC:3.6.3.14)
ATP synthase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01347};; ATP synthase F1 sector subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; F-ATPase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
ATP synthase subunit beta n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B1G7_9PROT
OR_08082017_2m_0_2um_scaffold_46_11
R_Methylotenera_45_14, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7297..8520)
-----------------
DNA (1224bp)
protein (408aa)
Major facilitator superfamily MFS_1 n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21S94_RHOFD
major facilitator transporter
Tax=RIFCSPLOWO2_02_FULL_Methylotenera_45_14_curated
OR_08082017_2m_0_2um_scaffold_46_12

Not on your lists

comp(8775..9326)
-----------------
DNA (552bp)
protein (184aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QS77_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI10099.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
OR_08082017_2m_0_2um_scaffold_46_13

Not on your lists

comp(9323..10621)
-----------------
DNA (1299bp)
protein (433aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QS76_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI10098.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
nickel-dependent hydrogenase large subunit
OR_08082017_2m_0_2um_scaffold_46_14

Not on your lists

comp(10618..11490)
-----------------
DNA (873bp)
protein (291aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QS75_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI10097.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
NADH ubiquinone oxidoreductase 20 kDa subunit
OR_08082017_2m_0_2um_scaffold_46_15

Not on your lists

comp(11505..12338)
-----------------
DNA (834bp)
protein (278aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QS74_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI10096.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hoxU; [NiFe] hydrogenase subunit gamma
OR_08082017_2m_0_2um_scaffold_46_16

Not on your lists

comp(12331..13503)
-----------------
DNA (1173bp)
protein (391aa)
Cytochrome c3 hydrogenase alpha (Or beta) chain n=1 Tax=mine drainage metagenome RepID=E6QS73_9ZZZZ
Cytochrome c3 hydrogenase alpha (Or beta) chain {ECO:0000313|EMBL:CBI10095.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
cytochrome C
OR_08082017_2m_0_2um_scaffold_46_17
RBG_16_Gamma2_64_11_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13534..14577)
-----------------
DNA (1044bp)
protein (348aa)
Hydrogenase expression/formation protein HypE n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y8F4_NITMU
hydrogenase expression/formation protein HypE
Tax=RBG_16_Gamma2_64_11_curated
OR_08082017_2m_0_2um_scaffold_46_18
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(14578..16938)
-----------------
DNA (2361bp)
protein (787aa)
Nickel-iron hydrogenase, carbamoyltransferase maturation factor n=1 Tax=Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM B-2133 / 20Z) RepID=G4T303_META2
hypF; nickel-iron hydrogenase, carbamoyltransferase maturation factor
Tax=RBG_16_Gamma2_65_34_curated
OR_08082017_2m_0_2um_scaffold_46_19
Thiobacillus prosperus, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(16935..18068)
-----------------
DNA (1134bp)
protein (378aa)
Protein required for maturation of hydrogenases n=1 Tax=mine drainage metagenome RepID=E6QTH5_9ZZZZ
Hydrogenase isoenzymes formation protein HypD {ECO:0000313|EMBL:KFZ89737.1}; TaxID=160660 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Thiobacillus prosperus.;"
hydrogenase expression/formation protein HypD
OR_08082017_2m_0_2um_scaffold_46_20
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(18061..18861)
-----------------
DNA (801bp)
protein (267aa)
Hydrogenase accessory protein HypB n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GQG5_THISH
hydrogenase nickel incorporation protein HypB
Hydrogenase accessory protein HypB {ECO:0000313|EMBL:ACL72360.1}; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
OR_08082017_2m_0_2um_scaffold_46_21
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18854..19252)
-----------------
DNA (399bp)
protein (133aa)
Probable hydrogenase nickel incorporation protein HypA n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GQG4_THISH
hydrogenase nickel incorporation protein HypA
Probable hydrogenase nickel incorporation protein HypA {ECO:0000256|HAMAP-Rule:MF_00213}; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
OR_08082017_2m_0_2um_scaffold_46_22
Methylococcus capsulatus, Methylococcus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(19245..19487)
-----------------
DNA (243bp)
protein (81aa)
Hydrogenase assembly chaperone hypC/hupF n=1 Tax=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) RepID=Q607Z7_METCA
hypC; hydrogenase assembly chaperone HypC/HupF
Hydrogenase assembly chaperone hypC/hupF {ECO:0000313|EMBL:AAU92407.1}; TaxID=243233 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylococcus.;" source="Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath).;"
OR_08082017_2m_0_2um_scaffold_46_23
Rhodopirellula baltica, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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19938..21872
-----------------
DNA (1935bp)
protein (645aa)
ATPase P (EC:3.6.3.5)
Heavy metal translocating P-type ATPase n=1 Tax=Rhodopirellula baltica WH47 RepID=F2B123_RHOBT
Heavy metal translocating P-type ATPase {ECO:0000313|EMBL:EGF24375.1}; TaxID=991778 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula baltica WH47.;"
OR_08082017_2m_0_2um_scaffold_46_24
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(21995..23362)
-----------------
DNA (1368bp)
protein (456aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000348ECDB
Fis family two component sigma54 specific transcriptional regulator
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
OR_08082017_2m_0_2um_scaffold_46_25
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23359..25167)
-----------------
DNA (1809bp)
protein (603aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034A9A35
sensor histidine kinase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
OR_08082017_2m_0_2um_scaffold_46_26
Hydrocarboniphaga effusa, Hydrocarboniphaga, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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25351..26454
-----------------
DNA (1104bp)
protein (368aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00037FA0B5
Uncharacterized protein {ECO:0000313|EMBL:EIT67850.1}; TaxID=1172194 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboniphaga effusa AP103.;"
hypothetical protein
OR_08082017_2m_0_2um_scaffold_46_27
BJP_S1_SUB10_Methylophilales_55_32, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

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26451..26954
-----------------
DNA (504bp)
protein (168aa)
hypothetical protein n=1 Tax=Methylovulum miyakonense RepID=UPI00037A9A05
hypothetical protein
Tax=BJP_S1_SUB10_Methylophilales_55_32
OR_08082017_2m_0_2um_scaffold_46_28
Pseudomonas brassicacearum, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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27105..27830
-----------------
DNA (726bp)
protein (242aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00036C5B0E
Thermostable hemolysin
Thermostable hemolysin {ECO:0000313|EMBL:AHL34396.1}; TaxID=930166 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas brassicacearum.;"
OR_08082017_2m_0_2um_scaffold_46_29
Mariprofundus ferrooxydans, Mariprofundus, Mariprofundales, Zetaproteobacteria, Proteobacteria, Bacteria

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27833..29335
-----------------
DNA (1503bp)
protein (501aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034B4F36
Long-chain acyl-CoA synthetases (AMP-forming) {ECO:0000313|EMBL:EAU55634.1}; TaxID=314345 species="Bacteria; Proteobacteria; Zetaproteobacteria; Mariprofundales; Mariprofundaceae; Mariprofundus.;" source="Mariprofundus ferrooxydans PV-1.;"
AMP-dependent synthetase and ligase
OR_08082017_2m_0_2um_scaffold_46_30
endosymbiont of unidentified scaly snail isolate Monju, Gammaproteobacteria, Proteobacteria, Bacteria

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29322..29969
-----------------
DNA (648bp)
protein (216aa)
TenA family transcriptional activator n=1 Tax=endosymbiont of unidentified scaly snail isolate Monju RepID=S6BEH0_9GAMM
TenA family transcriptional activator {ECO:0000313|EMBL:BAN69838.1}; TaxID=1248727 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="endosymbiont of unidentified scaly snail isolate Monju.;"
Long-chain fatty acid--CoA ligase
Displaying items 1-30 of 82 in total

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