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MPI_Proteobacteria_55_5_partial

MPI_Deltaproteobacteria_54_5
In projects: mpi

Consensus taxonomy: Deltaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: MPI_UNK

Properties

Avg. coverage: 5.47 Longest contig: 14.95 Kbp Bin length: 359.00 Kbp GC content: 53.78 %
Contigs count: 109 Features count: 460 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 17 / 55 BSCG 16 / 51 ASCG 0 / 38
Displaying items 1-50 of 109 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
MPI_scaffold_9522 MPI_UNK_1964
Species: Marinobacter sp. C1S70 (50%)
2 2568 bp 55.37 8.66 100.58
MPI_scaffold_10210 MPI_UNK_2001
Species: RBG_13_Nitrospirae_43_8_curated (66.67%)
3 2448 bp 58.01 5.11 100.12
MPI_scaffold_12884 MPI_new_44_37_721
Species: R_RIF_OD1_12_44_230 (50%)
2 2092 bp 46.37 6.45 100.10
MPI_scaffold_12380 MPI_new_44_37_671
Species: Pelobacter propionicus (100%)
1 2151 bp 46.86 5.70 100.00
MPI_scaffold_12638 MPI_UNK_1643
Species: GWC2_SYX_53_9_curated (100%)
1 2121 bp 49.65 5.66 100.00
MPI_scaffold_6771 MPI_UNK_1875
Class: Betaproteobacteria (66.67%)
3 3264 bp 49.72 4.52 99.82
MPI_scaffold_12344 MPI_UNK_1620
Phylum: Proteobacteria (66.67%)
3 2155 bp 55.96 4.29 99.68
MPI_scaffold_5200 MPI_new_44_37_140
Phylum: Proteobacteria (50%)
4 3916 bp 48.01 6.06 99.67
MPI_scaffold_7855 MPI_Deltaproteo_55_6_plus_182
Species: RBG_13_Nitrospirae_41_22_curated (50%)
2 2944 bp 57.68 5.60 99.56
MPI_scaffold_10053 MPI_UNK_1994
Class: Deltaproteobacteria (50%)
4 2472 bp 59.67 7.08 99.51
MPI_scaffold_10539 MPI_UNK_1431b
Species: GWA2_Deltaproteobacteria_55_10_curated (50%)
4 2400 bp 57.58 5.83 99.50
MPI_scaffold_6645 MPI_nov_test_55_6_227
Class: Deltaproteobacteria (62.5%)
8 6402 bp 60.81 6.05 99.06
MPI_scaffold_6950 MPI_new_49_70_42
Class: Gammaproteobacteria (50%)
4 3211 bp 50.05 5.29 99.03
MPI_scaffold_7988 MPI_nov_test_55_6_247
Species: CG_Nitrosp_02 (50%)
4 2911 bp 58.26 6.18 98.94
MPI_scaffold_18572 MPI_UNK_1489
Species: GWA2_WOR_2_45_18_curated (50%)
4 2322 bp 56.03 6.24 98.84
MPI_scaffold_11815 MPI_UNK_1566
Species: RLO_RIF03_38_15 (50%)
2 2216 bp 56.77 3.84 98.83
MPI_scaffold_6810 MPI_nov_test_55_6_233
Class: Deltaproteobacteria (100%)
5 3255 bp 55.48 5.38 98.80
MPI_scaffold_12095 MPI_UNK_1590
Domain: Bacteria (66.67%)
3 2183 bp 56.44 6.30 98.53
MPI_scaffold_8255 MPI_Deltaproteo_55_6_plus_205
Class: Deltaproteobacteria (50%)
4 2843 bp 60.99 5.28 98.35
MPI_scaffold_8888 MPI_UNK_1937
Species: GWC1_Treponema_61_84_curated (50%)
4 2692 bp 51.56 4.74 98.29
MPI_scaffold_7766 MPI_Deltaproteo_55_6_plus_178
Species: uncultured Desulfobacterium sp. (50%)
4 2965 bp 58.28 5.23 97.54
MPI_scaffold_8390 MPI_new_44_37_320
Class: Deltaproteobacteria (75%)
4 2811 bp 46.53 6.76 97.01
MPI_scaffold_11609 MPI_UNK_1539
Species: BJP_S1_SUB10_Syntrophobacterales_50_21 (100%)
3 2245 bp 54.12 3.34 96.88
MPI_scaffold_9107 MPI_nov_test_55_6_270
Species: R_Rokubacteria_68_19 (50%)
2 2644 bp 56.58 5.39 96.44
MPI_scaffold_6881 MPI_nov_test_55_6_234
Class: Deltaproteobacteria (50%)
4 3233 bp 56.26 7.11 96.13
MPI_scaffold_2490 MPI_UNK_1781 10 6618 bp 56.38 8.39 95.92
MPI_scaffold_7808 MPI_UNK_1907
Domain: Bacteria (75%)
4 2955 bp 58.61 5.08 95.84
MPI_scaffold_6571 MPI_Deltaproteo_55_6_plus_118
Order: Syntrophobacterales (66.67%)
6 3333 bp 49.83 5.40 95.32
MPI_scaffold_11726 MPI_UNK_1556
Phylum: Proteobacteria (66.67%)
3 2230 bp 51.88 7.17 94.98
MPI_scaffold_8388 MPI_Deltaproteo_55_6_plus_214
Species: BJP_S1_SUB10_Syntrophobacterales_50_21 (50%)
4 2812 bp 52.99 4.62 94.74
MPI_scaffold_6827 MPI_new_49_10_48
Order: Syntrophobacterales (80%)
5 3251 bp 53.52 5.08 92.65
MPI_scaffold_8267 MPI_new_49_10_68
Phylum: Proteobacteria (75%)
4 2840 bp 47.43 4.93 92.64
MPI_scaffold_12431 MPI_UNK_1627
Class: Deltaproteobacteria (66.67%)
3 2145 bp 52.77 4.43 92.59
MPI_scaffold_8577 MPI_new_49_10_78
Order: Syntrophobacterales (66.67%)
3 2766 bp 55.21 3.43 92.41
MPI_scaffold_11776 MPI_new_44_37_608
Species: BJP_S1_SUB10_Syntrophobacterales_50_21 (66.67%)
3 2222 bp 46.62 5.85 91.94
MPI_scaffold_7345 MPI_nov_test_55_6_240
Class: Deltaproteobacteria (50%)
4 3088 bp 56.96 5.18 91.71
MPI_scaffold_9045 MPI_new_49_10_84
Species: BJP_IG2102_Syntrophobacterales_60_12 (50%)
2 2657 bp 56.57 5.55 91.68
MPI_scaffold_10038 MPI_UNK_1992
Phylum: Proteobacteria (66.67%)
3 2475 bp 56.81 4.85 91.64
MPI_scaffold_4660 MPI_new_49_10_15
Species: CG_Syntroph_01 (60%)
5 4216 bp 48.62 5.63 91.30
MPI_scaffold_725 MPI_Deltaproteo_55_6_plus_1
Class: Deltaproteobacteria (81.82%)
22 14954 bp 56.68 6.49 90.96
MPI_scaffold_3170 MPI_Deltaproteo_55_6_plus_16
Class: Deltaproteobacteria (66.67%)
6 5592 bp 56.72 5.54 90.93
MPI_scaffold_9236 MPI_new_49_10_87
Class: Deltaproteobacteria (50%)
4 2617 bp 56.82 5.25 90.79
MPI_scaffold_12405 MPI_UNK_1625
Domain: Bacteria (100%)
4 2148 bp 53.63 4.66 90.78
MPI_scaffold_3555 MPI_nov_test_55_6_195
Phylum: Proteobacteria (60%)
5 5132 bp 58.01 5.26 90.61
MPI_scaffold_12976 MPI_new_44_37_726
Species: BJP_IG2069_Syntrophobacterales_47_18 (100%)
3 2080 bp 47.88 4.09 90.43
MPI_scaffold_7644 MPI_new_49_70_47
Class: Deltaproteobacteria (75%)
4 2998 bp 48.77 5.42 90.36
MPI_scaffold_6996 MPI_Deltaproteo_55_6_plus_140
Species: BJP_S1_SUB10_Syntrophobacterales_50_21 (100%)
6 3200 bp 50.19 4.69 90.09
MPI_scaffold_7346 MPI_new_49_10_55
Species: Smithella sp. F21 (100%)
3 3087 bp 47.42 3.56 89.99
MPI_scaffold_5667 MPI_Deltaproteo_55_6_plus_77
Domain: Bacteria (75%)
4 3686 bp 57.08 5.22 89.77
MPI_scaffold_5184 MPI_UNK_1834
Class: Methanomicrobia (50%)
6 3926 bp 49.16 5.86 89.63
Displaying items 1-50 of 109 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.