ggKbase home page

MEL_A1_1_137 Annotations

Value Algorithm Source Identity Coverage Bit score Evalue Cross references
Sel1 domain protein repeat-containing protein n=1 Tax=Odoribacter splanchnicus DSM 20712 RepID=F9Z945_ODOSD (db=UNIREF evalue=1.7e-12 bit_score=79.0 identity=27.1 coverage=79.126213592233) similarity UNIREF
DB: UNIREF
27.1 79.13 79 1.70e-12 csd:Clst_0690
RNA polymerase sigma factor similarity KEGG
DB: KEGG
25.2 234.0 68 2.20e-09 csd:Clst_0690
seg (db=Seg db_id=seg from=179 to=190) iprscan interpro
DB: Seg
null null null null csd:Clst_0690
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=14 to=199 evalue=1.0e-15 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:00169 iprscan interpro
DB: HMMTigr
null null null 1.00e-15 csd:Clst_0690
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=111 to=201 evalue=2.4e-14 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Funct iprscan interpro
DB: superfamily
null null null 2.40e-14 csd:Clst_0690
(db=HMMPfam db_id=PF04545 from=149 to=196 evalue=9.2e-13 interpro_id=IPR007630 interpro_description=RNA polymerase sigma-70 region 4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
null null null 9.20e-13 csd:Clst_0690
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=134 to=197 evalue=0.00051 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding) iprscan interpro
DB: Gene3D
null null null 5.10e-04 csd:Clst_0690
Sel1 domain protein repeat-containing protein {ECO:0000313|EMBL:CCX79463.1}; TaxID=1262834 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples. UNIPROT
DB: UniProtKB
100.0 205.0 401 7.10e-109 R5DGX8_9CLOT