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MEL_B2_2

Search features with annotation key words

Displaying items 31-60 of 338 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
MEL_B2_2_31
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(31229..31816)
DNA (588bp) protein (196aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=143 to=165)
Uncharacterized protein {ECO:0000313|EMBL:CDC18494.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_2_32
GWF2_Melainabacteria_37_15_curated, Melainabacteria, Bacteria

Not on your lists

comp(31961..32344)
DNA (384bp) protein (128aa)
seg (db=Seg db_id=seg from=17 to=28)
(db=HMMPfam db_id=PF03692 from=18 to=99 evalue=1.8e-08 interpro_id=IPR005358 interpro_description=Uncharacterised protein family UPF0153)
hypothetical protein; K06940 Tax=GWF2_Melainabacteria_37_15_curated
hypothetical protein
MEL_B2_2_33
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(32370..32801)
DNA (432bp) protein (144aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=25)
Uncharacterized protein {ECO:0000313|EMBL:CDC18483.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_2_34
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(32801..34801)
DNA (2001bp) protein (667aa)
hypothetical protein
seg (db=Seg db_id=seg from=438 to=458)
seg (db=Seg db_id=seg from=615 to=621)
TETRATRICOPEPTIDE REPEAT PROTEIN, TPR (db=HMMPanther db_id=PTHR23083 from=88 to=660 evalue=8.1e-58)
MEL_B2_2_35
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(34834..35409)
DNA (576bp) protein (192aa)
34834..35409 - ( gc_cont=0.352)
Uncharacterized protein {ECO:0000313|EMBL:CDC18475.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_2_36
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(35412..36866)
DNA (1455bp) protein (485aa)
polysaccharide biosynthesis protein
Polysaccharide biosynthesis protein n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XRC4_9BACT (db=UNIREF evalue=5.7e-30 bit_score=138.0 identity=25.4 coverage=81.64948453608247)
transmembrane_regions (db=TMHMM db_id=tmhmm from=307 to=326)
transmembrane_regions (db=TMHMM db_id=tmhmm from=341 to=358)
MEL_B2_2_37
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

37073..38614
DNA (1542bp) protein (514aa)
outer membrane efflux protein
seg (db=Seg db_id=seg from=35 to=48)
seg (db=Seg db_id=seg from=118 to=132)
seg (db=Seg db_id=seg from=184 to=195)
MEL_B2_2_38
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

38611..39777
DNA (1167bp) protein (389aa)
Periplasmic component of efflux system n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LU94_SYNAS (db=UNIREF evalue=0.0 bit_score=342.0 identity=46.7 coverage=99.48586118251927)
periplasmic component of efflux system
periplasmic component of efflux system
seg (db=Seg db_id=seg from=165 to=178)
MEL_B2_2_39
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

39779..40498
DNA (720bp) protein (240aa)
ABC transporter ATP-binding protein n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LU95_SYNAS (db=UNIREF evalue=0.0 bit_score=305.0 identity=66.4 coverage=93.75)
ABC transporter ATP-binding protein
ABC transporter ATP-binding protein
ABC_TRANSPORTER_1 (db=PatternScan db_id=PS00211 from=147 to=161 evalue=0.0 interpro_id=IPR017871 interpro_description=ABC transporter, conserved site GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: ATPase activity (GO:0016887))
MEL_B2_2_40
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

40495..41724
DNA (1230bp) protein (410aa)
Export ABC transporter permease protein n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LU96_SYNAS (db=UNIREF evalue=0.0 bit_score=508.0 identity=60.6 coverage=99.51219512195122)
export ABC transporter permease
export ABC transporter permease
seg (db=Seg db_id=seg from=335 to=362)
MEL_B2_2_41
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

41793..42524
DNA (732bp) protein (244aa)
phoP; two-component response regulator
no description (db=HMMSmart db_id=SM00448 from=3 to=114 evalue=2.2e-43 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
CheY-like (db=superfamily db_id=SSF52172 from=2 to=122 evalue=4.3e-39 interpro_id=IPR011006 interpro_description=CheY-like superfamily)
no description (db=Gene3D db_id=G3DSA:3.40.50.2300 from=4 to=120 evalue=5.7e-38)
MEL_B2_2_42
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

42524..44209
DNA (1686bp) protein (562aa)
integral membrane sensor signal transduction histidine kinase
transmembrane_regions (db=TMHMM db_id=tmhmm from=248 to=270)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
seg (db=Seg db_id=seg from=509 to=530)
MEL_B2_2_43
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

44307..45470
DNA (1164bp) protein (388aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=128 to=150)
seg (db=Seg db_id=seg from=225 to=248)
seg (db=Seg db_id=seg from=98 to=109)
coiled-coil (db=Coil db_id=coil from=217 to=265 evalue=NA)
MEL_B2_2_44
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(45500..45676)
DNA (177bp) protein (59aa)
45500..45676 - ( gc_cont=0.362)
Uncharacterized protein {ECO:0000313|EMBL:CDC18464.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_2_45
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(45692..46537)
DNA (846bp) protein (282aa)
Oxidoreductase FAD/NAD(P)-binding domain protein n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W0Z4_DESAS (db=UNIREF evalue=0.0 bit_score=350.0 identity=62.6 coverage=94.32624113475178)
ferredoxin-NADP(+) reductase subunit alpha
ferredoxin-NADP(+) reductase subunit alpha
Cytochrome-c3 hydrogenase, gamma subunit (db=HMMPIR db_id=PIRSF006816 from=1 to=254 evalue=1.3e-66 interpro_id=IPR012165 interpro_description=Cytochrome-c3 hydrogenase, gamma subunit GO=Biological Process: pyrimidine nucleotide biosynthetic process (GO:0006221), Molecular Function: flavin adenine dinucleotide binding (GO:0050660), Molecular Function: 2 iron, 2 sulfur cluster binding (GO:0051537))
MEL_B2_2_46
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(46584..47522)
DNA (939bp) protein (313aa)
F0F1 ATP synthase subunit gamma (EC:3.6.3.14)
seg (db=Seg db_id=seg from=17 to=34)
seg (db=Seg db_id=seg from=254 to=265)
ATPASE_GAMMA (db=PatternScan db_id=PS00153 from=296 to=309 evalue=0.0 interpro_id=IPR023632 interpro_description=ATPase, F1 complex, gamma subunit conserved site)
MEL_B2_2_47
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(47533..49050)
DNA (1518bp) protein (506aa)
ATP synthase subunit alpha n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=ATPA_CARHZ (db=UNIREF evalue=0.0 bit_score=674.0 identity=67.3 coverage=98.02371541501977)
atpA; ATP synthase F0F1 subunit alpha (EC:3.6.3.14)
atpA; ATP synthase F0F1 subunit alpha (EC:3.6.3.14)
atpA: ATP synthase F1, alpha subunit (db=HMMTigr db_id=TIGR00962 from=3 to=505 evalue=0.0 interpro_id=IPR005294 interpro_description=ATPase, F1 complex, alpha subunit GO=Biological Process: ATP synthesis coupled proton transport (GO:0015986), Cellular Component: proton-transporting ATP synthase complex, catalytic core F(1) (GO:0045261), Molecular Function: hydrogen ion transporting ATP synthase activity, rotational mechanism (GO:0046933), Molecular Function: proton-transporting ATPase activity, rotational m
MEL_B2_2_48
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(49078..49632)
DNA (555bp) protein (185aa)
ATP synthase F1 subunit delta
coiled-coil (db=Coil db_id=coil from=123 to=144 evalue=NA)
coiled-coil (db=Coil db_id=coil from=17 to=45 evalue=NA)
(db=HMMPfam db_id=PF00213 from=13 to=182 evalue=4.7e-45 interpro_id=IPR000711 interpro_description=ATPase, F1 complex, OSCP/delta subunit GO=Biological Process: ATP synthesis coupled proton transport (GO:0015986), Molecular Function: hydrogen ion transporting ATP synthase activity, rotational mechanism (GO:0046933))
MEL_B2_2_49
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(49645..50148)
DNA (504bp) protein (168aa)
ATP synthase, subunit b (AtpF)
ATP synthase subunit b n=1 Tax=Halanaerobium hydrogeniformans RepID=E4RP50_HALSL (db=UNIREF evalue=2.1e-08 bit_score=65.0 identity=26.0 coverage=86.90476190476191)
coiled-coil (db=Coil db_id=coil from=55 to=116 evalue=NA)
seg (db=Seg db_id=seg from=15 to=28)
MEL_B2_2_50
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(50141..50617)
DNA (477bp) protein (159aa)
ATP synthase F0 subunit B
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=26)
seg (db=Seg db_id=seg from=7 to=20)
(db=HMMPfam db_id=PF00430 from=6 to=136 evalue=1.6e-22 interpro_id=IPR002146 interpro_description=ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO=Molecular Function: hydrogen ion transmembrane transporter activity (GO:0015078), Biological Process: ATP synthesis coupled proton transport (GO:0015986), Cellular Component: proton-transporting ATP synthase complex, coupling factor F(o) (GO:0045263))
MEL_B2_2_51
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(50642..50887)
DNA (246bp) protein (82aa)
ATP synthase subunit C (EC:3.6.3.14)
ATP synthase subunit c n=3 Tax=Clostridium botulinum RepID=ATPL_CLOBA (db=UNIREF evalue=1.4e-10 bit_score=71.0 identity=55.1 coverage=81.70731707317073)
seg (db=Seg db_id=seg from=14 to=41)
transmembrane_regions (db=TMHMM db_id=tmhmm from=55 to=77)
MEL_B2_2_52
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(50930..51616)
DNA (687bp) protein (229aa)
atpI; ATP synthase F0F1 subunit A (EC:3.6.3.14)
ATP synthase subunit a n=1 Tax=Gloeobacter violaceus PCC 7421 RepID=ATP6_GLOVI (db=UNIREF evalue=1.2e-43 bit_score=182.0 identity=39.7 coverage=96.50655021834062)
transmembrane_regions (db=TMHMM db_id=tmhmm from=201 to=223)
seg (db=Seg db_id=seg from=77 to=91)
MEL_B2_2_53
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

51840..52133
DNA (294bp) protein (98aa)
seg (db=Seg db_id=seg from=69 to=90)
coiled-coil (db=Coil db_id=coil from=58 to=87 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:CDC18446.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_2_54
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists


comp(52186..52377)
DNA (192bp) protein (64aa)
50S ribosomal protein L28 n=1 Tax=Peptoniphilus duerdenii ATCC BAA-1640 RepID=E0NNN2_9FIRM (db=UNIREF evalue=5.0e-11 bit_score=72.0 identity=52.4 coverage=96.875)
ribosomal protein L28
L28p-like (db=superfamily db_id=SSF143800 from=1 to=63 evalue=1.3e-13)
L28: ribosomal protein L28 (db=HMMTigr db_id=TIGR00009 from=1 to=56 evalue=5.3e-12 interpro_id=IPR001383 interpro_description=Ribosomal protein L28 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
MEL_B2_2_55
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(52471..53181)
DNA (711bp) protein (237aa)
Pyridoxine 5'-phosphate synthase
seg (db=Seg db_id=seg from=172 to=185)
pdxJ: pyridoxine 5'-phosphate synthase (db=HMMTigr db_id=TIGR00559 from=2 to=236 evalue=1.4e-121 interpro_id=IPR004569 interpro_description=Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: pyridoxine biosynthetic process (GO:0008615))
(db=HMMPfam db_id=PF03740 from=1 to=235 evalue=2.0e-99 interpro_id=IPR004569 interpro_description=Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: pyridoxine biosynthetic process (GO:0008615))
MEL_B2_2_56
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(53281..55188)
DNA (1908bp) protein (636aa)
seg (db=Seg db_id=seg from=244 to=254)
seg (db=Seg db_id=seg from=197 to=208)
Uncharacterized protein {ECO:0000313|EMBL:CDC18441.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
hypothetical protein
MEL_B2_2_57
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

55359..56252
DNA (894bp) protein (298aa)
glycosyltransferase
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=1 to=277 evalue=1.4e-49)
no description (db=Gene3D db_id=G3DSA:3.90.550.10 from=5 to=231 evalue=1.3e-31)
(db=HMMPfam db_id=PF00535 from=6 to=188 evalue=5.6e-23 interpro_id=IPR001173 interpro_description=Glycosyl transferase, family 2)
MEL_B2_2_58
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

56253..56621
DNA (369bp) protein (123aa)
hypothetical protein
seg (db=Seg db_id=seg from=67 to=90)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=21)
transmembrane_regions (db=TMHMM db_id=tmhmm from=30 to=52)
MEL_B2_2_59
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

56726..57373
DNA (648bp) protein (216aa)
coiled-coil (db=Coil db_id=coil from=98 to=119 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:CDC18434.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_2_60
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

57475..58035
DNA (561bp) protein (187aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=135 to=157)
transmembrane_regions (db=TMHMM db_id=tmhmm from=55 to=77)
Uncharacterized protein {ECO:0000313|EMBL:CDC18432.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
Displaying items 31-60 of 338 in total

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