name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
MEL_B2_8_151
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
comp(159922..160938)
|
EF_HAND_1 (db=PatternScan db_id=PS00018 from=170 to=182 evalue=0.0 interpro_id=IPR018247 interpro_description=EF-Hand 1, calcium-binding site)
EF_HAND_1 (db=PatternScan db_id=PS00018 from=208 to=220 evalue=0.0 interpro_id=IPR018247 interpro_description=EF-Hand 1, calcium-binding site)
EF_HAND_1 (db=PatternScan db_id=PS00018 from=248 to=260 evalue=0.0 interpro_id=IPR018247 interpro_description=EF-Hand 1, calcium-binding site)
EF-hand (db=superfamily db_id=SSF47473 from=98 to=261 evalue=8.5e-14)
|
|
MEL_B2_8_152
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
161090..162682
|
serA; D-3-phosphoglycerate dehydrogenase
rbh
serA; D-3-phosphoglycerate dehydrogenase
rbh
D-3-phosphoglycerate dehydrogenase n=4 Tax=Brachyspira RepID=C0QYX0_BRAHW (db=UNIREF evalue=0.0 bit_score=614.0 identity=58.0 coverage=99.62335216572504)
D_2_HYDROXYACID_DH_1 (db=PatternScan db_id=PS00065 from=141 to=168 evalue=0.0 interpro_id=IPR006140 interpro_description=D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding GO=Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (GO:0016616), Molecular Function: cofactor binding (GO:0048037), Biological Process: oxidation-reduction process (GO:0055114))
|
|
MEL_B2_8_153
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
162822..164045
|
seg (db=Seg db_id=seg from=19 to=26)
Uncharacterized protein {ECO:0000313|EMBL:CDC21911.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
|
|
MEL_B2_8_154
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
comp(164059..164910)
|
Shikimate dehydrogenase 2 n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FZ58_9FIRM (db=UNIREF evalue=1.4e-45 bit_score=190.0 identity=39.2 coverage=91.54929577464789)
aroE; shikimate 5-dehydrogenase (EC:1.1.1.25)
coiled-coil (db=Coil db_id=coil from=33 to=54 evalue=NA)
seg (db=Seg db_id=seg from=131 to=138)
|
|
MEL_B2_8_155
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
comp(164903..167185)
|
DNA topoisomerase n=1 Tax=Gloeobacter violaceus PCC 7421 RepID=Q7NGH1_GLOVI (db=UNIREF evalue=0.0 bit_score=744.0 identity=48.6 coverage=97.24047306176085)
topA; DNA topoisomerase I
topA; DNA topoisomerase I
seg (db=Seg db_id=seg from=2 to=17)
|
|
MEL_B2_8_156
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
comp(167240..168415)
|
coiled-coil (db=Coil db_id=coil from=71 to=102 evalue=NA)
seg (db=Seg db_id=seg from=71 to=99)
seg (db=Seg db_id=seg from=253 to=267)
Uncharacterized protein {ECO:0000313|EMBL:CDC18280.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
|
|
MEL_B2_8_157
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
168592..170286
|
hypothetical protein
Putative TPR domain-containing protein n=2 Tax=Brachyspira RepID=C0QXW5_BRAHW (db=UNIREF evalue=6.2e-36 bit_score=158.0 identity=25.7 coverage=84.77876106194691)
no description (db=Gene3D db_id=G3DSA:1.25.40.10 from=305 to=543 evalue=8.6e-52 interpro_id=IPR011990 interpro_description=Tetratricopeptide-like helical GO=Molecular Function: binding (GO:0005488))
TETRATRICOPEPTIDE REPEAT PROTEIN, TPR (db=HMMPanther db_id=PTHR23083:SF20 from=222 to=542 evalue=8.9e-45)
|
|
MEL_B2_8_158
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
170366..171010
|
hypothetical protein
seg (db=Seg db_id=seg from=109 to=120)
Uncharacterized protein {ECO:0000313|EMBL:CDC18284.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
Uncharacterized protein n=2 Tax=Geobacillus RepID=A4IJP0_GEOTN
|
|
MEL_B2_8_159
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
comp(171050..172054)
|
hgdC3; activator of (R)-2-hydroxyglutaryl-CoA dehydratase HgdC
hgdC3; activator of (R)-2-hydroxyglutaryl-CoA dehydratase HgdC
CoA-substrate-specific enzyme activase n=1 Tax=Desulfotomaculum gibsoniae DSM 7213 RepID=G6I5E9_9FIRM (db=UNIREF evalue=0.0 bit_score=395.0 identity=59.8 coverage=93.43283582089552)
|
|
MEL_B2_8_160
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
172169..172765
|
172169..172765 + ( gc_cont=0.332)
Uncharacterized protein {ECO:0000313|EMBL:CDC18290.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
|
|
MEL_B2_8_161
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
comp(172762..173322)
|
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
(db=HMMPfam db_id=PF00011 from=99 to=165 evalue=1.3e-06 interpro_id=IPR002068 interpro_description=Heat shock protein Hsp20)
HSP20-like chaperones (db=superfamily db_id=SSF49764 from=81 to=179 evalue=5.5e-06 interpro_id=IPR008978 interpro_description=HSP20-like chaperone)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=34 evalue=6.0)
|
|
MEL_B2_8_162
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
comp(173401..174198)
|
DNA polymerase beta domain-containing protein
Nucleotidyltransferase (db=superfamily db_id=SSF81301 from=1 to=94 evalue=1.5e-07)
Uncharacterized protein {ECO:0000313|EMBL:CDC18295.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
hypothetical protein alias=MEL_C1_C00003G00123 id=162824 tax=MEL_C1 species=Streptococcus sp. oral taxon 058 genus=Streptococcus taxon_order=Lactobacillales taxon_class=Bacilli phylum=Firmicutes
|
|
MEL_B2_8_163
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
174341..175168
|
174341..175168 + ( gc_cont=0.354)
Uncharacterized protein {ECO:0000313|EMBL:CDC18297.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
|
|
MEL_B2_8_164
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
175155..176075
|
seg (db=Seg db_id=seg from=157 to=171)
seg (db=Seg db_id=seg from=11 to=23)
coiled-coil (db=Coil db_id=coil from=56 to=77 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:CDC18300.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
|
|
MEL_B2_8_165
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
comp(176080..177498)
|
RND efflux system, outer membrane lipoprotein, NodT family
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
coiled-coil (db=Coil db_id=coil from=182 to=203 evalue=NA)
coiled-coil (db=Coil db_id=coil from=348 to=369 evalue=NA)
|
|
MEL_B2_8_166
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
177573..178043
|
transcriptional regulator, marr family
Transcriptional regulator, MarR family n=1 Tax=Paludibacter propionicigenes WB4 RepID=E4T2U0_PALPW (db=UNIREF evalue=5.3e-14 bit_score=83.0 identity=29.5 coverage=91.0828025477707)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=9 to=147 evalue=2.7e-24)
no description (db=HMMSmart db_id=SM00347 from=33 to=134 evalue=1.5e-13 interpro_id=IPR000835 interpro_description=Transcription regulator HTH, MarR-type GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
|
|
MEL_B2_8_167
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
178061..179161
|
hlyD_fusE; Multidrug resistance transporter HlyD/EmrA/FusE
transmembrane_regions (db=TMHMM db_id=tmhmm from=36 to=58)
coiled-coil (db=Coil db_id=coil from=206 to=234 evalue=NA)
coiled-coil (db=Coil db_id=coil from=112 to=133 evalue=NA)
|
|
MEL_B2_8_168
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
179165..180736
|
proP; Permease of the major facilitator superfamily
transmembrane_regions (db=TMHMM db_id=tmhmm from=179 to=201)
transmembrane_regions (db=TMHMM db_id=tmhmm from=123 to=145)
transmembrane_regions (db=TMHMM db_id=tmhmm from=245 to=263)
|
|
MEL_B2_8_169
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
comp(180817..181356)
|
rbr2; rubrerythrin
no description (db=Gene3D db_id=G3DSA:1.20.1260.10 from=3 to=134 evalue=9.1e-48 interpro_id=IPR012347 interpro_description=Ferritin-related)
Ferritin-like (db=superfamily db_id=SSF47240 from=2 to=136 evalue=1.0e-40 interpro_id=IPR009078 interpro_description=Ferritin/ribonucleotide reductase-like GO=Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: transition metal ion binding (GO:0046914), Biological Process: oxidation-reduction process (GO:0055114))
(db=HMMPfam db_id=PF02915 from=10 to=127 evalue=1.5e-25 interpro_id=IPR003251 interpro_description=Rubrerythrin GO=Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: metal ion binding (GO:0046872), Biological Process: oxidation-reduction process (GO:0055114))
|
|
MEL_B2_8_170
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
comp(181397..181534)
|
Rubredoxin n=1 Tax=Prevotella buccalis ATCC 35310 RepID=D1W3C8_9BACT (db=UNIREF evalue=5.6e-12 bit_score=75.0 identity=59.6 coverage=95.65217391304348)
rdx; rubredoxin
(db=HMMPfam db_id=PF00301 from=3 to=42 evalue=9.7e-17 interpro_id=IPR024935 interpro_description=Rubredoxin domain GO=Molecular Function: iron ion binding (GO:0005506))
Rubredoxin-like (db=superfamily db_id=SSF57802 from=1 to=45 evalue=6.2e-15)
|
|
MEL_B2_8_171
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
comp(181557..182024)
|
Fe2+/Zn2+ uptake regulation protein
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=16 to=147 evalue=1.7e-29)
(db=HMMPfam db_id=PF01475 from=24 to=140 evalue=8.1e-27 interpro_id=IPR002481 interpro_description=Ferric-uptake regulator GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
Ferric uptake regulator Fur family {ECO:0000313|EMBL:CDC18315.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="
|
|
MEL_B2_8_172
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
comp(182161..182466)
|
hypothetical protein
seg (db=Seg db_id=seg from=49 to=64)
Uncharacterized protein {ECO:0000313|EMBL:CDC18316.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
hypothetical protein alias=ACD20_C00071G00020,ACD20_2792.21729.15G0020,ACD20_2792.21729.15_20 id=19571 tax=ACD20 species=Syntrophomonas wolfei genus=Syntrophomonas taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
|
|
MEL_B2_8_173
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
comp(182552..183835)
|
seg (db=Seg db_id=seg from=5 to=12)
seg (db=Seg db_id=seg from=255 to=266)
coiled-coil (db=Coil db_id=coil from=255 to=276 evalue=NA)
coiled-coil (db=Coil db_id=coil from=141 to=169 evalue=NA)
|
|
MEL_B2_8_174
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
183946..185160
|
Iron-containing alcohol dehydrogenase n=1 Tax=Desulfotomaculum ruminis DSM 2154 RepID=F6DRK3_DESRL (db=UNIREF evalue=0.0 bit_score=536.0 identity=64.7 coverage=98.27160493827161)
iron-containing alcohol dehydrogenase
iron-containing alcohol dehydrogenase
Dehydroquinate synthase-like (db=superfamily db_id=SSF56796 from=6 to=397 evalue=3.2e-95)
|
|
MEL_B2_8_175
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
comp(185201..187309)
|
coiled-coil (db=Coil db_id=coil from=658 to=679 evalue=NA)
coiled-coil (db=Coil db_id=coil from=401 to=422 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:CDC18324.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
|
|
MEL_B2_8_176
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
187442..187942
|
leuD; 3-isopropylmalate dehydratase small subunit
LEUD_arch: 3-isopropylmalate dehydratase, s (db=HMMTigr db_id=TIGR02087 from=5 to=160 evalue=1.2e-73 interpro_id=IPR011827 interpro_description=3-isopropylmalate dehydratase, small subunit, subgroup GO=Molecular Function: 3-isopropylmalate dehydratase activity (GO:0003861), Biological Process: leucine biosynthetic process (GO:0009098), Cellular Component: 3-isopropylmalate dehydratase complex (GO:0009316))
LeuD/IlvD-like (db=superfamily db_id=SSF52016 from=2 to=161 evalue=2.2e-50 interpro_id=IPR015928 interpro_description=Aconitase/3-isopropylmalate dehydratase, swivel GO=Biological Process: metabolic process (GO:0008152))
3-ISOPROPYLMALATE DEHYDRATASE (db=HMMPanther db_id=PTHR11670:SF2 from=25 to=165 evalue=7.0e-47)
|
annotated as TCA-not likely, blast hits are to Lysine synthesis and other subunits for lysine synthesis enzyme is present.
kelly wrighton
(11/17/12)
|
MEL_B2_8_177
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
comp(188013..188381)
|
50S ribosomal protein L18
L18_bact: ribosomal protein L18 (db=HMMTigr db_id=TIGR00060 from=7 to=122 evalue=1.4e-64 interpro_id=IPR004389 interpro_description=Ribosomal protein L18, bacterial GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Translational machinery components (db=superfamily db_id=SSF53137 from=1 to=122 evalue=8.2e-41)
(db=HMMPfam db_id=PF00861 from=7 to=122 evalue=1.5e-39 interpro_id=IPR005484 interpro_description=Ribosomal protein L18/L5 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
|
|
MEL_B2_8_178
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
comp(188479..189021)
|
50S ribosomal protein L6 n=1 Tax=Dialister succinatiphilus YIT 11850 RepID=H1D134_9FIRM (db=UNIREF evalue=0.0 bit_score=229.0 identity=62.4 coverage=97.23756906077348)
LSU ribosomal protein L6P
seg (db=Seg db_id=seg from=32 to=46)
RIBOSOMAL_L6_1 (db=PatternScan db_id=PS00525 from=155 to=163 evalue=0.0 interpro_id=IPR002358 interpro_description=Ribosomal protein L6, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
|
|
MEL_B2_8_179
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
comp(189088..189483)
|
rpsH; 30S ribosomal protein S8
seg (db=Seg db_id=seg from=30 to=42)
RIBOSOMAL_S8 (db=PatternScan db_id=PS00053 from=101 to=118 evalue=0.0 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
(db=HMMPfam db_id=PF00410 from=4 to=131 evalue=9.2e-53 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
|
|
MEL_B2_8_180
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
comp(189551..189757)
|
rpsN; 30S ribosomal protein S14
RIBOSOMAL_S14 (db=PatternScan db_id=PS00527 from=30 to=52 evalue=0.0 interpro_id=IPR018271 interpro_description=Ribosomal protein S14, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
30S RIBOSOMAL PROTEIN S14 (db=HMMPanther db_id=PTHR19836:SF6 from=1 to=68 evalue=6.9e-35)
30S RIBOSOMAL PROTEIN S14 (db=HMMPanther db_id=PTHR19836 from=1 to=68 evalue=6.9e-35 interpro_id=IPR001209 interpro_description=Ribosomal protein S14 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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