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qh_1_UNK

In projects: QH_1  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 21.16 Longest contig: 66.06 Kbp Bin length: 43.26 Mbp GC content: 61.13 %
Contigs count: 18764 Features count: 57383 rRNAs count: 15 tRNAs count: 0

Genome completeness

partial RP 42 / 55 MC: 36 BSCG 39 / 51 MC: 35 ASCG 38 / 38 MC: 38
Displaying items 18351-18400 of 18764 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_1_scaffold_22073
Species: Natrialba magadii (50%)
2 1033 bp 54.70 5.03 88.87
qh_1_scaffold_22605 1 1014 bp 56.41 5.03 27.81
qh_1_scaffold_16175
Species: Natronorubrum bangense (100%)
2 1311 bp 46.53 5.03 89.70
qh_1_scaffold_7656
Class: Halobacteria (50%)
4 2167 bp 44.21 5.03 78.77
qh_1_scaffold_12515 1 1571 bp 53.66 5.03 98.35
qh_1_scaffold_9543 5 1888 bp 41.10 5.03 92.80
qh_1_scaffold_17509
Species: Halosimplex carlsbadense (50%)
2 1235 bp 62.02 5.02 57.81
qh_1_scaffold_5588 3 2628 bp 56.58 5.02 85.96
qh_1_scaffold_18303 1 1195 bp 47.87 5.02 99.67
qh_1_scaffold_7514
Class: Betaproteobacteria (50%)
4 2192 bp 54.01 5.02 82.53
qh_1_scaffold_22544 2 1017 bp 51.72 5.01 99.71
qh_1_scaffold_14740 2 1398 bp 57.30 5.01 69.74
qh_1_scaffold_17095
Species: Desulfovibrio piezophilus (50%)
2 1258 bp 56.52 5.01 39.11
qh_1_scaffold_11203 2 1697 bp 53.15 5.01 33.24
qh_1_scaffold_19970
Species: Rhodothermus marinus (50%)
2 1117 bp 57.30 5.01 77.62
qh_1_scaffold_20457 1 1097 bp 56.88 5.01 99.82
qh_1_scaffold_19308 2 2239 bp 46.00 5.00 27.47
qh_1_scaffold_8281 2 2799 bp 49.95 5.00 26.05
qh_1_scaffold_22399
Species: RBG_13_ACD39_59_9_curated (50%)
2 1021 bp 53.57 5.00 93.14
qh_1_scaffold_8591
Species: Salinibacter ruber (75%)
4 2019 bp 55.52 5.00 74.15
qh_1_scaffold_17821 3 1220 bp 57.38 5.00 89.02
qh_1_scaffold_19007 1 1161 bp 52.37 5.00 84.24
qh_1_scaffold_16014
Species: Salinibacter ruber (100%)
1 1320 bp 59.85 5.00 99.77
qh_1_scaffold_17402 1 1241 bp 56.89 5.00 99.84
qh_1_scaffold_20883 2 1080 bp 51.20 5.00 25.56
qh_1_scaffold_16723 1 1280 bp 46.56 5.00 99.84
qh_1_scaffold_21361 1 1061 bp 32.99 5.00 12.16
qh_1_scaffold_32188
Species: Halobacterium sp. DL1 (50%)
2 1322 bp 53.10 4.99 94.40
qh_1_scaffold_14763
Species: halophilic archaeon DL31 (50%)
2 2045 bp 48.80 4.99 47.09
qh_1_scaffold_21316
Species: Acanthamoeba castellanii (50%)
2 1063 bp 48.92 4.99 104.42
qh_1_scaffold_12395 4 1582 bp 53.73 4.99 72.44
qh_1_scaffold_21824
Species: Thermobrachium celere (50%)
2 1044 bp 50.29 4.98 100.00
qh_1_scaffold_18553
Species: Haloferax volcanii (100%)
1 1184 bp 47.64 4.98 99.83
qh_1_scaffold_3053 5 3795 bp 52.36 4.98 57.15
qh_1_scaffold_12119 2 1608 bp 49.07 4.98 100.00
qh_1_scaffold_21192 2 1067 bp 53.51 4.97 75.63
qh_1_scaffold_28343
Species: Phaeodactylum tricornutum (50%)
2 1509 bp 53.21 4.97 99.80
qh_1_scaffold_28562
Species: Natronomonas pharaonis (50%)
2 1429 bp 58.01 4.97 62.56
qh_1_scaffold_18918 4 1166 bp 55.57 4.97 83.10
qh_1_scaffold_18079
Species: Edwardsiella tarda (100%)
1 1208 bp 59.77 4.97 75.50
qh_1_scaffold_13471
Species: Halococcus saccharolyticus (50%)
4 2355 bp 42.42 4.97 85.61
qh_1_scaffold_31817 1 1449 bp 51.62 4.97 8.49
qh_1_scaffold_20210
Species: Phaeodactylum tricornutum (50%)
2 1670 bp 54.73 4.97 45.09
qh_1_scaffold_19764
Species: Halogeometricum pallidum (50%)
2 1126 bp 48.22 4.97 82.06
qh_1_scaffold_13776 1 1468 bp 54.90 4.97 65.80
qh_1_scaffold_22204 1 1028 bp 48.15 4.96 99.81
qh_1_scaffold_22221
Species: Halobiforma lacisalsi (100%)
1 1028 bp 50.10 4.96 56.61
qh_1_scaffold_15817 1 1331 bp 54.85 4.96 31.56
qh_1_scaffold_19541
Species: Guillardia theta (50%)
2 2062 bp 50.34 4.95 38.41
qh_1_scaffold_16109 4 1314 bp 56.24 4.95 88.13
Displaying items 18351-18400 of 18764 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.