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qh_1_UNK

In projects: QH_1  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 21.16 Longest contig: 66.06 Kbp Bin length: 43.26 Mbp GC content: 61.13 %
Contigs count: 18764 Features count: 57383 rRNAs count: 15 tRNAs count: 0

Genome completeness

partial RP 42 / 55 MC: 36 BSCG 39 / 51 MC: 35 ASCG 38 / 38 MC: 38
Displaying items 18601-18650 of 18764 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_1_scaffold_10998
Species: Desulfatibacillum alkenivorans (50%)
2 1719 bp 39.33 4.54 90.58
qh_1_scaffold_17934
Species: Truepera radiovictrix (50%)
2 1215 bp 27.57 4.53 70.37
qh_1_scaffold_17518 4 1235 bp 48.26 4.53 100.81
qh_1_scaffold_18374 2 1192 bp 54.87 4.53 78.02
qh_1_scaffold_20772 2 1085 bp 50.05 4.52 93.73
qh_1_scaffold_16643
Species: Amphimedon queenslandica (50%)
2 1284 bp 54.28 4.52 73.60
qh_1_scaffold_21871
Species: Phaeodactylum tricornutum (100%)
1 1041 bp 62.15 4.51 99.71
qh_1_scaffold_14755
Species: Pedobacter glucosidilyticus (100%)
1 1397 bp 39.51 4.51 80.53
qh_1_scaffold_19646 2 1132 bp 53.62 4.51 51.68
qh_1_scaffold_12990 2 1530 bp 55.95 4.51 90.78
qh_1_scaffold_16569
Species: Thiolapillus brandeum (50%)
2 1288 bp 50.70 4.50 97.13
qh_1_scaffold_14086 3 1444 bp 43.63 4.50 73.96
qh_1_scaffold_18702 3 1177 bp 53.44 4.50 85.90
qh_1_scaffold_12523 3 2691 bp 41.77 4.50 99.44
qh_1_scaffold_30804
Species: Halovirus HHTV-1 (50%)
2 1511 bp 55.06 4.50 93.91
qh_1_scaffold_21762 2 1046 bp 53.35 4.49 68.55
qh_1_scaffold_13754 0 1470 bp 32.38 4.49 0.00
qh_1_scaffold_21665
Species: Halococcus saccharolyticus (50%)
2 1049 bp 52.53 4.48 100.10
qh_1_scaffold_19028
Species: Halogranum salarium (50%)
2 1160 bp 56.47 4.48 79.40
qh_1_scaffold_19029 1 1160 bp 51.21 4.48 58.19
qh_1_scaffold_22274
Species: Arthrospira platensis (50%)
2 1026 bp 64.91 4.48 45.32
qh_1_scaffold_21631 1 1051 bp 54.23 4.47 41.39
qh_1_scaffold_35079 1 1389 bp 53.71 4.46 25.70
qh_1_scaffold_36681
Species: Acyrthosiphon pisum (100%)
1 1323 bp 30.69 4.46 33.11
qh_1_scaffold_19398
Species: Pedobacter antarcticus (100%)
1 1143 bp 48.64 4.46 99.74
qh_1_scaffold_21541
Species: Haloferax gibbonsii (50%)
2 1054 bp 46.39 4.46 100.19
qh_1_scaffold_22056
Species: Naegleria gruberi (50%)
2 1034 bp 32.69 4.45 93.42
qh_1_scaffold_17944 0 1214 bp 43.49 4.45 0.00
qh_1_scaffold_22681 1 1011 bp 30.37 4.45 99.70
qh_1_scaffold_9560
Species: Haloarcula japonica (66.67%)
3 1886 bp 53.08 4.45 97.99
qh_1_scaffold_14461 1 1416 bp 52.26 4.45 12.92
qh_1_scaffold_22636
Species: Natronobacterium gregoryi (50%)
2 1013 bp 45.51 4.44 74.63
qh_1_scaffold_21997 1 1036 bp 48.84 4.44 55.02
qh_1_scaffold_11026 3 1716 bp 48.95 4.43 89.16
qh_1_scaffold_21925 1 1039 bp 56.69 4.43 97.02
qh_1_scaffold_22478
Species: Haloarcula vallismortis (100%)
2 1018 bp 56.09 4.42 100.49
qh_1_scaffold_17299
Species: Haloferax sulfurifontis (100%)
1 1247 bp 41.30 4.41 99.84
qh_1_scaffold_23822 3 2084 bp 51.20 4.41 58.45
qh_1_scaffold_37480 3 1158 bp 60.45 4.40 77.98
qh_1_scaffold_18569 1 1183 bp 53.00 4.40 99.92
qh_1_scaffold_18581 3 1183 bp 51.31 4.40 52.75
qh_1_scaffold_22961 2 1001 bp 52.35 4.40 32.67
qh_1_scaffold_11783
Species: Natrinema versiforme (50%)
2 1641 bp 52.10 4.39 73.86
qh_1_scaffold_18485 2 1187 bp 52.49 4.38 48.27
qh_1_scaffold_19953
Species: Halorubrum californiense (50%)
2 1118 bp 49.73 4.38 69.50
qh_1_scaffold_13198
Species: Salinarchaeum sp. Harcht-Bsk1 (50%)
2 1511 bp 63.93 4.37 90.14
qh_1_scaffold_16294
Species: Halopiger xanaduensis (50%)
2 1303 bp 46.97 4.37 75.29
qh_1_scaffold_20325 2 1102 bp 50.73 4.36 65.34
qh_1_scaffold_18330
Species: halophilic archaeon J07HB67 (50%)
2 1194 bp 56.62 4.36 78.64
qh_1_scaffold_12375 1 1584 bp 50.76 4.36 8.14
Displaying items 18601-18650 of 18764 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.