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qh_1_UNK

In projects: QH_1  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 21.16 Longest contig: 66.06 Kbp Bin length: 43.26 Mbp GC content: 61.13 %
Contigs count: 18764 Features count: 57383 rRNAs count: 15 tRNAs count: 0

Genome completeness

partial RP 42 / 55 MC: 36 BSCG 39 / 51 MC: 35 ASCG 38 / 38 MC: 38
Displaying items 151-200 of 18764 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_1_scaffold_14086 3 1444 bp 43.63 4.50 73.96
qh_1_scaffold_18702 3 1177 bp 53.44 4.50 85.90
qh_1_scaffold_12523 3 2691 bp 41.77 4.50 99.44
qh_1_scaffold_30804
Species: Halovirus HHTV-1 (50%)
2 1511 bp 55.06 4.50 93.91
qh_1_scaffold_21871
Species: Phaeodactylum tricornutum (100%)
1 1041 bp 62.15 4.51 99.71
qh_1_scaffold_14755
Species: Pedobacter glucosidilyticus (100%)
1 1397 bp 39.51 4.51 80.53
qh_1_scaffold_19646 2 1132 bp 53.62 4.51 51.68
qh_1_scaffold_12990 2 1530 bp 55.95 4.51 90.78
qh_1_scaffold_20772 2 1085 bp 50.05 4.52 93.73
qh_1_scaffold_16643
Species: Amphimedon queenslandica (50%)
2 1284 bp 54.28 4.52 73.60
qh_1_scaffold_17934
Species: Truepera radiovictrix (50%)
2 1215 bp 27.57 4.53 70.37
qh_1_scaffold_17518 4 1235 bp 48.26 4.53 100.81
qh_1_scaffold_18374 2 1192 bp 54.87 4.53 78.02
qh_1_scaffold_13357 3 1498 bp 49.13 4.54 50.47
qh_1_scaffold_19826 2 1123 bp 53.78 4.54 55.57
qh_1_scaffold_10381 3 1786 bp 53.64 4.54 73.07
qh_1_scaffold_22642 2 1013 bp 53.60 4.54 91.21
qh_1_scaffold_22644
Species: Halanaeroarchaeum sulfurireducens (50%)
2 1013 bp 50.54 4.54 64.26
qh_1_scaffold_8385 4 2048 bp 37.55 4.54 93.31
qh_1_scaffold_22017 1 1035 bp 56.33 4.54 99.71
qh_1_scaffold_10998
Species: Desulfatibacillum alkenivorans (50%)
2 1719 bp 39.33 4.54 90.58
qh_1_scaffold_14518 2 2156 bp 45.92 4.55 90.58
qh_1_scaffold_13137 3 1517 bp 48.71 4.55 50.82
qh_1_scaffold_14589
Species: BJP_IG2102_Bacteroidetes_40_9 (100%)
1 1407 bp 47.90 4.55 47.55
qh_1_scaffold_20483 3 1096 bp 45.99 4.56 72.54
qh_1_scaffold_8299
Species: Haloferax alexandrinus (100%)
1 2061 bp 51.29 4.56 78.17
qh_1_scaffold_16846 3 1273 bp 42.11 4.56 98.74
qh_1_scaffold_19962 3 1118 bp 46.78 4.56 58.23
qh_1_scaffold_10116 3 1817 bp 37.42 4.57 48.71
qh_1_scaffold_6981
Species: Haloarcula sinaiiensis (50%)
2 2299 bp 48.06 4.57 89.52
qh_1_scaffold_13219
Species: Haloferax sp. ATCC BAA-645 (100%)
1 1509 bp 47.32 4.57 100.00
qh_1_scaffold_19042
Species: Halococcus salifodinae (100%)
1 1160 bp 55.09 4.57 32.59
qh_1_scaffold_18601
Species: Pseudomonas brassicacearum (100%)
1 1182 bp 44.84 4.57 93.91
qh_1_scaffold_18648
Species: GWD2_Desulfuromonadales_54_10_curated (50%)
2 1179 bp 51.65 4.58 96.44
qh_1_scaffold_21692
Species: Capsaspora owczarzaki (100%)
1 1048 bp 57.63 4.58 95.04
qh_1_scaffold_5438 4 3670 bp 56.05 4.58 57.06
qh_1_scaffold_13860
Species: RBG_19FT_COMBO_Actinobacteria_70_19_curated (50%)
2 1461 bp 46.34 4.59 57.70
qh_1_scaffold_6247 7 2463 bp 40.64 4.59 62.24
qh_1_scaffold_13030
Species: Halostagnicola larsenii (100%)
1 1526 bp 54.00 4.59 99.87
qh_1_scaffold_13035 1 1525 bp 51.48 4.59 67.08
qh_1_scaffold_15975
Species: Emiliania huxleyi (50%)
2 1322 bp 56.13 4.61 96.44
qh_1_scaffold_23475
Order: Halobacteriales (66.67%)
3 1867 bp 42.26 4.61 83.72
qh_1_scaffold_21323 1 1063 bp 56.26 4.61 40.08
qh_1_scaffold_12366
Species: Salinibacter ruber (100%)
2 1584 bp 57.32 4.61 95.83
qh_1_scaffold_18364 1 1192 bp 49.24 4.61 27.68
qh_1_scaffold_12843 2 1541 bp 47.89 4.61 42.83
qh_1_scaffold_15606 1 1343 bp 47.88 4.62 26.36
qh_1_scaffold_18885 1 1167 bp 61.27 4.63 99.74
qh_1_scaffold_19350
Species: Natronolimnobius innermongolicus (100%)
1 1145 bp 36.07 4.63 99.83
qh_1_scaffold_20869 2 1081 bp 53.65 4.63 35.25
Displaying items 151-200 of 18764 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.