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qh_1_UNK

In projects: QH_1  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 21.16 Longest contig: 66.06 Kbp Bin length: 43.26 Mbp GC content: 61.13 %
Contigs count: 18764 Features count: 57383 rRNAs count: 15 tRNAs count: 0

Genome completeness

partial RP 42 / 55 MC: 36 BSCG 39 / 51 MC: 35 ASCG 38 / 38 MC: 38
Displaying items 401-450 of 18764 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_1_scaffold_17095
Species: Desulfovibrio piezophilus (50%)
2 1258 bp 56.52 5.01 39.11
qh_1_scaffold_11203 2 1697 bp 53.15 5.01 33.24
qh_1_scaffold_19970
Species: Rhodothermus marinus (50%)
2 1117 bp 57.30 5.01 77.62
qh_1_scaffold_20457 1 1097 bp 56.88 5.01 99.82
qh_1_scaffold_17509
Species: Halosimplex carlsbadense (50%)
2 1235 bp 62.02 5.02 57.81
qh_1_scaffold_5588 3 2628 bp 56.58 5.02 85.96
qh_1_scaffold_18303 1 1195 bp 47.87 5.02 99.67
qh_1_scaffold_7514
Class: Betaproteobacteria (50%)
4 2192 bp 54.01 5.02 82.53
qh_1_scaffold_22073
Species: Natrialba magadii (50%)
2 1033 bp 54.70 5.03 88.87
qh_1_scaffold_22605 1 1014 bp 56.41 5.03 27.81
qh_1_scaffold_16175
Species: Natronorubrum bangense (100%)
2 1311 bp 46.53 5.03 89.70
qh_1_scaffold_7656
Class: Halobacteria (50%)
4 2167 bp 44.21 5.03 78.77
qh_1_scaffold_12515 1 1571 bp 53.66 5.03 98.35
qh_1_scaffold_9543 5 1888 bp 41.10 5.03 92.80
qh_1_scaffold_11524
Species: Squalus acanthias (100%)
1 1666 bp 59.18 5.04 99.94
qh_1_scaffold_19375
Species: Leadbetterella byssophila (50%)
2 1705 bp 54.72 5.04 98.53
qh_1_scaffold_19623
Species: Rhodothermus marinus (50%)
2 1132 bp 62.81 5.04 44.52
qh_1_scaffold_8560
Species: Haladaptatus paucihalophilus (50%)
2 3093 bp 47.04 5.04 40.93
qh_1_scaffold_22149
Species: Haloquadratum walsbyi (50%)
2 1031 bp 48.59 5.04 87.00
qh_1_scaffold_20562 2 1092 bp 63.28 5.04 100.00
qh_1_scaffold_20564 1 1092 bp 53.48 5.04 56.04
qh_1_scaffold_9283 3 1923 bp 54.03 5.04 94.38
qh_1_scaffold_12341 1 1587 bp 54.32 5.04 100.00
qh_1_scaffold_39549 3 1112 bp 52.07 5.04 63.13
qh_1_scaffold_15849 3 1329 bp 53.80 5.04 68.40
qh_1_scaffold_18858 2 1168 bp 56.76 5.05 76.28
qh_1_scaffold_25416
Species: Cyanothece sp. PCC 7822 (100%)
1 1446 bp 46.82 5.05 99.79
qh_1_scaffold_11342 3 1684 bp 52.49 5.05 65.20
qh_1_scaffold_18061
Species: Synechococcus sp. WH 5701 (100%)
1 1208 bp 61.09 5.05 63.58
qh_1_scaffold_16262 4 1306 bp 58.35 5.05 73.97
qh_1_scaffold_13041 2 1525 bp 50.56 5.05 73.57
qh_1_scaffold_14893 3 1387 bp 59.63 5.05 99.06
qh_1_scaffold_21136
Species: Halorhabdus tiamatea (50%)
2 1070 bp 54.21 5.05 96.45
qh_1_scaffold_20655
Species: Natronorubrum tibetense (100%)
1 1089 bp 53.26 5.05 100.00
qh_1_scaffold_10084
Domain: Bacteria (66.67%)
3 1821 bp 55.68 5.05 89.79
qh_1_scaffold_5468 4 2671 bp 58.03 5.05 91.65
qh_1_scaffold_10111
Species: Chlorobium sp. GBChlB (50%)
2 1818 bp 57.37 5.06 85.15
qh_1_scaffold_29935 3 1660 bp 55.24 5.06 26.20
qh_1_scaffold_17321
Species: Haloarcula japonica (50%)
2 1245 bp 52.53 5.06 75.42
qh_1_scaffold_4647 5 2943 bp 44.82 5.06 84.81
qh_1_scaffold_10429 4 2371 bp 52.64 5.06 99.70
qh_1_scaffold_22233
Species: Rhodopirellula sallentina (100%)
1 1027 bp 62.32 5.06 88.51
qh_1_scaffold_22243 3 1027 bp 54.33 5.06 52.87
qh_1_scaffold_16991
Species: Halococcus saccharolyticus (50%)
2 1264 bp 47.78 5.06 100.16
qh_1_scaffold_12844 1 1541 bp 54.45 5.06 78.07
qh_1_scaffold_11475 3 2822 bp 57.09 5.07 58.47
qh_1_scaffold_20251
Species: RBG_16_Planctomycetes_64_12_curated (100%)
1 1105 bp 62.08 5.07 99.91
qh_1_scaffold_20267
Species: halophilic archaeon DL31 (50%)
2 1105 bp 55.48 5.07 95.02
qh_1_scaffold_19348 3 1145 bp 62.45 5.07 94.85
qh_1_scaffold_21228
Species: Desulfobacca acetoxidans (100%)
1 1066 bp 48.41 5.07 99.91
Displaying items 401-450 of 18764 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.