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qh_1_UNK

In projects: QH_1  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 21.16 Longest contig: 66.06 Kbp Bin length: 43.26 Mbp GC content: 61.13 %
Contigs count: 18764 Features count: 57383 rRNAs count: 15 tRNAs count: 0

Genome completeness

partial RP 42 / 55 MC: 36 BSCG 39 / 51 MC: 35 ASCG 38 / 38 MC: 38
Displaying items 201-250 of 18764 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_1_scaffold_13074
Genus: Natronomonas (66.67%)
3 1523 bp 70.85 15.36 101.05
qh_1_scaffold_10166 3 1811 bp 56.32 7.23 101.05
qh_1_scaffold_15618
Species: Halogranum salarium (100%)
2 1342 bp 56.93 6.78 101.04
qh_1_scaffold_19142
Species: Halosimplex carlsbadense (50%)
2 1155 bp 67.27 7.53 101.04
qh_1_scaffold_34456
Genus: Haloferax (66.67%)
3 1363 bp 63.46 10.05 101.03
qh_1_scaffold_18833
Order: Natrialbales (100%)
3 1170 bp 71.54 36.50 101.03
qh_1_scaffold_29330
Order: Halobacteriales (66.67%)
3 1369 bp 72.17 12.78 101.02
qh_1_scaffold_15047 3 1378 bp 43.54 8.85 101.02
qh_1_scaffold_20410
Species: Halostagnicola larsenii (50%)
2 1099 bp 57.23 7.92 101.00
qh_1_scaffold_19245
Species: Haladaptatus paucihalophilus (100%)
4 2659 bp 67.13 9.70 100.98
qh_1_scaffold_11204 4 1697 bp 57.16 7.90 100.94
qh_1_scaffold_21284
Species: Haloterrigena thermotolerans (50%)
2 1064 bp 64.38 6.48 100.94
qh_1_scaffold_9058
Species: Haloarcula hispanica (50%)
2 1953 bp 68.71 19.61 100.92
qh_1_scaffold_16272
Order: Halobacteriales (66.67%)
3 1305 bp 67.97 9.04 100.92
qh_1_scaffold_14692
Species: Haloarcula vallismortis (100%)
2 2075 bp 63.47 19.76 100.92
qh_1_scaffold_20306
Species: Natronomonas pharaonis (50%)
2 1103 bp 67.45 13.69 100.91
qh_1_scaffold_6431
Species: Halosimplex carlsbadense (50%)
2 3824 bp 63.26 63.68 100.89
qh_1_scaffold_22602
Species: Rhodothermus marinus (50%)
2 1014 bp 57.10 6.51 100.89
qh_1_scaffold_12332
Species: Haloferax larsenii (50%)
2 1588 bp 65.62 13.85 100.88
qh_1_scaffold_38998
Species: Halosimplex carlsbadense (50%)
4 1026 bp 67.06 18.91 100.88
qh_1_scaffold_15156
Class: Halobacteria (66.67%)
3 1371 bp 49.31 5.54 100.88
qh_1_scaffold_11280
Species: Halococcus hamelinensis (66.67%)
3 2516 bp 64.86 10.06 100.87
qh_1_scaffold_4786 3 4075 bp 68.54 8.91 100.86
qh_1_scaffold_21655
Species: Tolypothrix campylonemoides (50%)
2 1050 bp 62.67 6.67 100.86
qh_1_scaffold_9009
Species: Natrinema versiforme (50%)
4 3174 bp 59.48 46.19 100.85
qh_1_scaffold_7030
Species: Halobacterium salinarum (75%)
4 2288 bp 66.70 8.65 100.83
qh_1_scaffold_17879
Species: Haloarcula sp. CBA1115 (50%)
2 1217 bp 46.75 5.67 100.82
qh_1_scaffold_12192
Species: Halanaeroarchaeum sulfurireducens (50%)
2 1601 bp 72.08 15.24 100.81
qh_1_scaffold_17518 4 1235 bp 48.26 4.53 100.81
qh_1_scaffold_13972
Genus: Haloferax (66.67%)
3 1857 bp 74.91 19.01 100.81
qh_1_scaffold_14933
Species: Salinibacter ruber (100%)
3 1384 bp 65.82 8.02 100.79
qh_1_scaffold_22060
Order: Halobacteriales (66.67%)
3 1646 bp 69.74 7.47 100.79
qh_1_scaffold_10492
Species: Natronomonas moolapensis (100%)
2 1774 bp 66.07 14.04 100.79
qh_1_scaffold_22340
Species: Haladaptatus paucihalophilus (50%)
2 1024 bp 69.43 6.35 100.78
qh_1_scaffold_14489
Species: Haloterrigena turkmenica (50%)
2 1414 bp 63.72 20.72 100.78
qh_1_scaffold_16288
Species: Halobiforma lacisalsi (100%)
2 1304 bp 64.95 11.50 100.77
qh_1_scaffold_25934
Class: Halobacteria (66.67%)
3 1828 bp 55.85 8.26 100.77
qh_1_scaffold_24857 2 1572 bp 55.22 6.36 100.76
qh_1_scaffold_11054
Order: Halobacteriales (66.67%)
3 1712 bp 70.62 34.40 100.76
qh_1_scaffold_33666
Species: Salinibacter ruber (100%)
2 1063 bp 72.06 73.47 100.75
qh_1_scaffold_20187
Species: Natronomonas moolapensis (100%)
2 1334 bp 68.59 60.87 100.75
qh_1_scaffold_17030
Genus: Halorubrum (50%)
4 2362 bp 70.91 20.15 100.72
qh_1_scaffold_14656
Species: Natronomonas moolapensis (66.67%)
3 1403 bp 75.20 31.79 100.71
qh_1_scaffold_16951
Species: Natronomonas pharaonis (50%)
2 1266 bp 66.98 12.88 100.71
qh_1_scaffold_22702
Species: Halobacterium salinarum (50%)
2 1010 bp 72.87 27.82 100.69
qh_1_scaffold_22713
Species: Halorubrum californiense (50%)
2 1010 bp 63.96 79.31 100.69
qh_1_scaffold_31183
Species: Natronomonas pharaonis (50%)
2 1299 bp 70.36 28.02 100.69
qh_1_scaffold_14560
Order: Natrialbales (66.67%)
3 1734 bp 67.47 25.66 100.69
qh_1_scaffold_13905
Species: Halosimplex carlsbadense (66.67%)
3 1457 bp 63.21 10.02 100.69
qh_1_scaffold_22302
Species: Halogeometricum pallidum (50%)
2 1025 bp 71.02 13.27 100.68
Displaying items 201-250 of 18764 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.