ggKbase home page

13_1_20cm_3_scaffold_7439_4

Organism: 13_1_20CM_3_Gemmatimonas_aurantiaca_60_15

partial RP 35 / 55 MC: 1 BSCG 30 / 51 ASCG 8 / 38 MC: 1
Location: 3129..4595

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8U9_GEMAT similarity UNIREF
DB: UNIREF100
  • Identity: 69.6
  • Coverage: 500.0
  • Bit_score: 676
  • Evalue 1.50e-191
RNA polymerase sigma-54 factor, RpoN {ECO:0000313|EMBL:AHG90787.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;" UNIPROT
DB: UniProtKB
  • Identity: 80.3
  • Coverage: 492.0
  • Bit_score: 782
  • Evalue 4.60e-223
RNA polymerase sigma-54 factor, RpoN similarity KEGG
DB: KEGG
  • Identity: 80.3
  • Coverage: 492.0
  • Bit_score: 782
  • Evalue 9.30e-224

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Gemmatimonadetes bacterium KBS708 → Gemmatimonadetes → Gemmatimonadetes → Bacteria

Sequences

DNA sequence
Length: 1467
GTGAAGCCCGGGCTTAACCAGTCGACGCAGCTCCGGCAGGAGCTCAAGATCAATCCTCGCCTTTACCAGGCGATGGATCTGCTCTACATGCCGCTGCTCGATCTGCAGCAGCACCTGAAACAAGAGCTGCTGAATAATCCGTTCCTCGACCTCGTCGAAGCCGAAGAAGAGGAAGAGGAGGAGCAGGAGACCGAGGTTGAACAGACACAGACCGAGCCGGAAGACGAGCGGACTGGAGAGATCGATTGGGAGGAGATTCTGCTCGACGGCTTCGACACCGCTGGCGGTCGTCGTGAGGAGCACGAAGAGCGGGAATACTTCGAGCCGGTCACGGTTGCCACCCGCGACCTCAGTGACCACCTGCGTGATCAGGTCAGTTTGCTCGAGCTCACTCCACGCGAAACCGTCCTGGCCGACGAGTTCATAGGCAACGTTAACGATGACGGCTATCTCGCTTGTGGAGTTGAAGATATCATCATCACGCTGAACGACGTCGTCACCAAGAGTGCCGAGAGCTCGGGACGCGACATCGATAGCCTGCCGCTCTACACGATCGACGAAGGCAACAAGATGCTGGCGACGATCCAAAGCCTGGATCCGCCGGGCGTTGGTGCGCGAGACCTTCGCGAATGCCTGCTACTCCAGCTAAAGGAATCCGGGCTCGAGCAGTCTGTCCCTTATCGGCTCGTGCGCGATTGTTTCGAGGAGCTGATCAACCACCGCTGGAGCGAGATCTCCAAGCGCTTTGGTATCAGCGCCACCGACGTCCAGAAGGCGGCCGATGAGATTGCCAAGCTTGACCCCAAACCGGGACTTCAGTTCGGGTCACGCGACGACAATTACATCATCCCCGATCTCATCGTCGAGAAGATCGACGACAAATACCACGTTTTCCTGAACGACGCCAATCTTCCACGCCTCAAACTAAGCCGAGCCTATCAGGAGATTGCGCGCGACAAGAAGAAGTTCGACGGCGAGAACAAGGAGTTCATCTCCAACAAGCTGAACTCGGCGAACTGGATGATTCAGGCGATCGAGCAGCGGCGGCAGACGATGCTCAAGGTCATGAACTATATCGTCGAGCGGCAGCGCGAGTTCTTCGAGAAGGGCATTCAGCACCTCAAGCCGCTGACACTGCGCGAGGTCGCCGAAGTGATCAACATGCACGAATCGACGGTGAGCCGCGTCACCAATGAAAAGTTCGTGCAGACACCGCGTGGCGTACTGCCTCTGAAGTTCTTCTTCTCGTCCGGGCTGGCGACCTCGGACGGCGAGGACGTGTCGGCGCGAGGCATCAAAGCGCAGTTGCAGAAGCTGGTGCAGGAGGAAGATCCGAAGCACCCGCTAACGGACCAGGCAATCGTCAACATTCTCCGCGAGAGCGGCGTGCAGATCGCTCGTCGCACGGTCGCGAAGTATCGAGATCAACTGGGCGTTCTATCGGCAAGGATGCGGAAACGCGTATGA
PROTEIN sequence
Length: 489
VKPGLNQSTQLRQELKINPRLYQAMDLLYMPLLDLQQHLKQELLNNPFLDLVEAEEEEEEEQETEVEQTQTEPEDERTGEIDWEEILLDGFDTAGGRREEHEEREYFEPVTVATRDLSDHLRDQVSLLELTPRETVLADEFIGNVNDDGYLACGVEDIIITLNDVVTKSAESSGRDIDSLPLYTIDEGNKMLATIQSLDPPGVGARDLRECLLLQLKESGLEQSVPYRLVRDCFEELINHRWSEISKRFGISATDVQKAADEIAKLDPKPGLQFGSRDDNYIIPDLIVEKIDDKYHVFLNDANLPRLKLSRAYQEIARDKKKFDGENKEFISNKLNSANWMIQAIEQRRQTMLKVMNYIVERQREFFEKGIQHLKPLTLREVAEVINMHESTVSRVTNEKFVQTPRGVLPLKFFFSSGLATSDGEDVSARGIKAQLQKLVQEEDPKHPLTDQAIVNILRESGVQIARRTVAKYRDQLGVLSARMRKRV*