ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 11.22 Longest contig: 98.32 Kbp Bin length: 539.23 Mbp GC content: 61.96 %

Contigs count: 226196 Features count: 702625 rRNAs count: 39 tRNAs count: 4579

Genome completeness

megabin RP 54 / 55 MC: 54 BSCG 51 / 51 MC: 51 ASCG 38 / 38 MC: 38

Displaying items 551-600 of 226196 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
13_1_40cm_scaffold_195573 Species: GWC2_Rokubacteria_70_16_curated (50%)	2	1134 bp	70.90	67.95	80.69
13_1_40cm_scaffold_100104 Phylum: Gemmatimonadetes (66.67%)	3	1655 bp	71.60	67.94	100.42
13_1_40cm_scaffold_187427 Species: RLO_Gemmatimonadetes_68_9 (50%)	2	1168 bp	73.20	67.91	92.47
13_1_40cm_scaffold_64517	7	3504 bp	63.33	67.91	69.78
13_1_40cm_scaffold_235931 Phylum: Rokubacteria (60%)	5	3087 bp	70.04	67.89	97.96
13_1_40cm_scaffold_42905 Species: GWC2_Rokubacteria_70_16_curated (50%)	2	2503 bp	67.44	67.89	78.27
13_1_40cm_scaffold_203372 Species: GWC2_Gemmatimonadetes_71_10_curated (50%)	2	1102 bp	71.51	67.87	101.00
13_1_40cm_scaffold_192356	2	1147 bp	72.28	67.84	100.17
13_1_40cm_scaffold_213709 Species: RLO_Gemmatimonadetes_68_9 (100%)	2	1062 bp	71.85	67.83	98.59
13_1_40cm_scaffold_222930	3	1980 bp	58.64	67.82	80.45
13_1_40cm_scaffold_4916 Species: R_Nitrospirae_62_14 (50%)	12	11414 bp	61.92	67.75	91.94
13_1_40cm_scaffold_46628 Species: R_Nitrospirae_62_14 (100%)	1	2408 bp	57.52	67.75	99.92
13_1_40cm_scaffold_281040 Species: RLO_Gemmatimonadetes_68_9 (100%)	2	1401 bp	72.09	67.72	95.07
13_1_40cm_scaffold_190274 Species: RLO_Gemmatimonadetes_68_9 (66.67%)	3	1987 bp	63.81	67.71	83.19
13_1_40cm_scaffold_153358	3	1862 bp	65.20	67.67	98.12
13_1_40cm_scaffold_84453 Species: R_Nitrospirae_66_17 (100%)	2	1803 bp	59.57	67.66	97.84
13_1_40cm_scaffold_164603 Species: GWA2_Rokubacteria_73_35_curated (50%)	2	1265 bp	76.76	67.66	101.50
13_1_40cm_scaffold_76378 Species: R_Nitrospirae_66_17 (50%)	2	1896 bp	60.92	67.65	98.10
13_1_40cm_scaffold_200593	2	1113 bp	61.01	67.65	71.16
13_1_40cm_scaffold_38732 Species: Candidatus Nitrospira defluvii (75%)	4	2628 bp	63.39	67.62	99.89
13_1_40cm_scaffold_211786 Species: RLO_Gemmatimonadetes_68_9 (50%)	2	1069 bp	76.33	67.62	100.19
13_1_40cm_scaffold_165151 Species: R_Rokubacteria_73_56 (100%)	2	1262 bp	69.18	67.62	100.55
13_1_40cm_scaffold_129091 Species: RLO_Gemmatimonadetes_68_9 (100%)	2	1449 bp	71.36	67.56	100.21
13_1_40cm_scaffold_92562 Species: GWF2_Lentisphaerae_50_93_curated (50%)	2	2762 bp	59.49	67.52	83.42
13_1_40cm_scaffold_209412 Species: GWA2_Rokubacteria_73_35_curated (50%)	2	1078 bp	70.59	67.52	97.12
13_1_40cm_scaffold_15994	4	5313 bp	62.60	67.51	94.41
13_1_40cm_scaffold_353449 Species: GWC2_ACD39_50_8 (50%)	2	1231 bp	74.98	67.49	84.32
13_1_40cm_scaffold_142512 Species: Hyalangium minutum (50%)	2	1373 bp	66.57	67.46	99.85
13_1_40cm_scaffold_163460 Species: Hyalangium minutum (50%)	2	1270 bp	70.47	67.39	96.61
13_1_40cm_scaffold_48334 Species: R_Rokubacteria_73_56 (50%)	4	2367 bp	72.54	67.34	99.11
13_1_40cm_scaffold_94137	3	1708 bp	62.00	67.31	95.02
13_1_40cm_scaffold_86439 Species: RBG_16_Gemmatimonadetes_66_8_curated (50%)	2	2822 bp	73.64	67.24	91.96
13_1_40cm_scaffold_205448	1	1094 bp	58.50	67.22	24.95
13_1_40cm_scaffold_13113 Phylum: Nitrospirae (62.5%)	8	7493 bp	64.45	67.20	92.45
13_1_40cm_scaffold_139414 Species: Sphingomonas paucimobilis (50%)	2	1390 bp	64.89	67.17	98.42
13_1_40cm_scaffold_96190 Species: Intrasporangium oryzae (50%)	2	1689 bp	64.89	67.17	98.22
13_1_40cm_scaffold_58593	5	2155 bp	61.21	67.09	100.37
13_1_40cm_scaffold_71457 Species: RBG_16_Gemmatimonadetes_66_8_curated (66.67%)	3	3024 bp	70.07	67.07	97.62
13_1_40cm_scaffold_185263 Species: RBG_16_Chloroflexi_68_14_curated (100%)	1	1176 bp	69.47	67.02	99.74
13_1_40cm_scaffold_60178 Species: R_Rokubacteria_71_18 (66.67%)	3	2900 bp	73.72	66.99	95.38
13_1_40cm_scaffold_168011 Species: RLO_Rokubacteria_71_22 (50%)	2	1250 bp	77.12	66.87	99.60
13_1_40cm_scaffold_319386 Species: RLO_Rokubacteria_71_22 (50%)	2	2256 bp	63.34	66.87	89.76
13_1_40cm_scaffold_229391 Species: R_Elusimicrobia_57_9 (50%)	2	1003 bp	64.91	66.82	99.60
13_1_40cm_scaffold_179007 Species: Gemmatimonas aurantiaca (100%)	1	1202 bp	69.13	66.82	99.83
13_1_40cm_scaffold_41321 Phylum: Proteobacteria (50%)	4	3280 bp	62.93	66.81	100.52
13_1_40cm_scaffold_167083	3	1973 bp	64.98	66.79	82.11
13_1_40cm_scaffold_207430 Species: GWA2_Rokubacteria_73_35_curated (100%)	1	1086 bp	70.53	66.79	81.49
13_1_40cm_scaffold_263220 Species: RLO_Gemmatimonadetes_68_9 (100%)	2	1274 bp	70.09	66.79	100.08
13_1_40cm_scaffold_177700	6	3388 bp	63.02	66.75	93.65
13_1_40cm_scaffold_159866 Species: RBG_16_Archaea_50_20_curated (100%)	1	1286 bp	68.74	66.75	99.38

Displaying items 551-600 of 226196 in total

13_1_40cm_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

13_1_40cm_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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