ggKbase home page

SCNpilot_BF_INOC_scaffold_8319_2

Organism: SCNpilot_BF_INOC_UNK

megabin RP 52 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 16 / 38 MC: 15
Location: comp(1712..2413)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Clostridium leptum CAG:27 RepID=R6NHU5_9CLOT similarity UNIREF
DB: UNIREF100
  • Identity: 66.2
  • Coverage: 231.0
  • Bit_score: 305
  • Evalue 4.30e-80
sigK; RNA polymerase sigma-28 factor similarity KEGG
DB: KEGG
  • Identity: 69.4
  • Coverage: 229.0
  • Bit_score: 315
  • Evalue 1.20e-83
  • rbh
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi similarity UNIPROT
DB: UniProtKB
  • Identity: 69.4
  • Coverage: 229.0
  • Bit_score: 315
  • Evalue 5.80e-83

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

[Clostridium] cellulosi → Ruminiclostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 702
ATGTTTACAACTCTGGTAGGACTAATATTATCCAATATTTTATACCTGGTACTCCACGTAAAAGGCAACGGCTCTTTTCCTCGCCCCCTGACTGCAGCAGAAGAGAAAAAATATTTGACACTCCTTCGGGAAAACAACGATACGGAAGCAAGGGGATTGTTGATCGAACACAATTTGAGACTGGTAGCACATATCATCAAAAAATACTACTCTTCTCAATATGACCAGGATGATTTGATCTCAATCGGTACCATCGGATTGATCAAAGCGGTTTCCAGCTTTGACGACCTAAAAGGTACCCGCCTTGCCACCTATGCCGCACGATGCATAGAAAATGAAATACTAATGTATTTCAGAAACCAGAAAAAGTCTGCACAGGATATTTATATGAGCGATCCGATTGATACCGATAAGGACGGAAATGCGCTGACCTTAATCGATGTAATTGCGGATGACGGGGATATCATTGACAATCTTGACATTAAAATAAAGAGCGAGAAATTGTCCCGATATATCAAGGAAGTGCTCAGTGACCGGGAGCAATTGATCATCAAGCTGCGCTACGGGCTGGACGGCAGTGACGAATTAACCCAGCGGGAGGTTGCTAAGCTGCTCAAAATTTCACGTTCCTATGTTTCGAGGATTGAGAAGAAATCCCTGGGGCTTCTACTCGATAAATTTAAGCACGAAAAAAAGCTATAA
PROTEIN sequence
Length: 234
MFTTLVGLILSNILYLVLHVKGNGSFPRPLTAAEEKKYLTLLRENNDTEARGLLIEHNLRLVAHIIKKYYSSQYDQDDLISIGTIGLIKAVSSFDDLKGTRLATYAARCIENEILMYFRNQKKSAQDIYMSDPIDTDKDGNALTLIDVIADDGDIIDNLDIKIKSEKLSRYIKEVLSDREQLIIKLRYGLDGSDELTQREVAKLLKISRSYVSRIEKKSLGLLLDKFKHEKKL*