ggKbase home page

SCNpilot_BF_INOC_scaffold_67_56

Organism: SCNpilot_BF_INOC_Clostridium_37_18

near complete RP 48 / 55 MC: 5 BSCG 50 / 51 MC: 4 ASCG 14 / 38 MC: 4
Location: comp(61285..62391)

Top 3 Functional Annotations

Value Algorithm Source
RNA binding S1 domain protein n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TRF8_ALKMQ similarity UNIREF
DB: UNIREF100
  • Identity: 49.7
  • Coverage: 364.0
  • Bit_score: 369
  • Evalue 3.80e-99
RNA-binding S1 domain-containing protein similarity KEGG
DB: KEGG
  • Identity: 49.7
  • Coverage: 364.0
  • Bit_score: 369
  • Evalue 1.10e-99
RNA binding S1 domain protein {ECO:0000313|EMBL:ABR48776.1}; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus metalliredigens similarity UNIPROT
DB: UniProtKB
  • Identity: 49.7
  • Coverage: 364.0
  • Bit_score: 369
  • Evalue 5.40e-99

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Alkaliphilus metalliredigens → Alkaliphilus → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 1107
ATGGATAATCACAGTTCAATGGCTGAAATGATGGAGCAAATCGAAGAATCATTGAAAATTCCAAGAAAAGGGTCAATTGTTAAAGGAAGCATAATTCAAGTTAATGCTGATGTTATCATCGTTAACATTGGCTATAAATCTGACGGCGTAATCCCAAGAAATGAAGTGTCAGCAGATGCTAACTTCGATTTGAAAGCCAATTTCAAAGAAGGCGATGAATTAGATGTATTTATCGTCAACCATGATAATGGCGAAGGTAACGTTTTACTTTCTTTAAGAAAGGTAAACGTAGACAAAGATTGGGAAGAATTAGAAGCAATTCACGAAAAAGACCAACCAATTCATGTAAGAGTAACTGAATCTGTTAACGGCGGATTAATTGCTTTCTACAAAGAAATCAGAGGTTTTGTTCCTGCTTCTCAGCTTTCTGACAGATTTGTCAAAAACTTAAAGCCATATATTGGTCAAGAGTTAAAAGTAAAAGTAATTGAAATCAACAAACAAAAGAAAAGAGCAGTATTCTCTCACAAAGAATTTGCTGTGCTTGAAAAACAAGCGGCTAGAGAATCCTTCTGGACAAGTATAGAAGTAGGTCAAGTCGTAAAAGGCGAAGTTAAACGCATTACGAACTTTGGCGCATTCGTTGATATCGGTGGTATGGACGGTTTGGTTCACGTAACTGAGATGAGCTGGGGAAGAATTAAACCAGTTAACGAATTCGTAAGAGTTGGTCAAACAGTTGACGTTAAAGTGATCGATGCTAACAAAGACGAAAACAAAATTTCACTTTCAATCAAACAATTAACACCAGAGCCATGGGAAACTTTCGCTGACAGATATGAAGTTGGTGGCGTTTACGAAGGTAAAGTGGTTAATTTAACTGATTTTGGTGCGTTTGTTGAGCTTGAGCCAGGCATCGAAGGTCTAGTTCACGTATCTCACATCGCTAAAGAGCATGTTGAAAAGCCTGCTGATGTATTAAGAGTGAATCAATCAGTTGAAATTAAAATTCTTGAGTATGTTGCAGAAGAAAAGAAAGTTAAACTTTCTATGAAAGCTGTAAATGAGCCTACTGAAGAAGTAACTGAAGCTGTAGACGCTGAATAA
PROTEIN sequence
Length: 369
MDNHSSMAEMMEQIEESLKIPRKGSIVKGSIIQVNADVIIVNIGYKSDGVIPRNEVSADANFDLKANFKEGDELDVFIVNHDNGEGNVLLSLRKVNVDKDWEELEAIHEKDQPIHVRVTESVNGGLIAFYKEIRGFVPASQLSDRFVKNLKPYIGQELKVKVIEINKQKKRAVFSHKEFAVLEKQAARESFWTSIEVGQVVKGEVKRITNFGAFVDIGGMDGLVHVTEMSWGRIKPVNEFVRVGQTVDVKVIDANKDENKISLSIKQLTPEPWETFADRYEVGGVYEGKVVNLTDFGAFVELEPGIEGLVHVSHIAKEHVEKPADVLRVNQSVEIKILEYVAEEKKVKLSMKAVNEPTEEVTEAVDAE*