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QH_2_UNK

In projects: QH_2  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 20.77 Longest contig: 62.94 Kbp Bin length: 51.65 Mbp GC content: 61.28 %
Contigs count: 21073 Features count: 67835 rRNAs count: 15 tRNAs count: 624

Genome completeness

megabin RP 54 / 55 MC: 47 BSCG 45 / 51 MC: 42 ASCG 38 / 38 MC: 38
Displaying items 451-500 of 21073 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_2_scaffold_24194
Species: Haloarcula sinaiiensis (50%)
2 1005 bp 61.49 6.67 100.30
qh_2_scaffold_16156
Species: Natrialba asiatica (50%)
2 1346 bp 71.69 40.34 100.30
qh_2_scaffold_23987
Species: Halostagnicola sp. A56 (50%)
2 1011 bp 61.33 5.44 100.30
qh_2_scaffold_24013
Species: Natronococcus occultus (50%)
2 1011 bp 63.20 6.92 100.30
qh_2_scaffold_11630
Order: Halobacteriales (66.67%)
3 1687 bp 71.19 24.24 100.30
qh_2_scaffold_23899
Species: Salinarchaeum sp. Harcht-Bsk1 (50%)
2 1014 bp 62.43 5.42 100.30
qh_2_scaffold_16535
Order: Halobacteriales (66.67%)
3 2028 bp 69.72 7.40 100.30
qh_2_scaffold_8722
Species: Haloferax larsenii (50%)
2 2031 bp 59.82 22.50 100.30
qh_2_scaffold_23797
Species: CG_CPR18-01 (50%)
2 1017 bp 50.05 7.08 100.30
qh_2_scaffold_22238 4 1696 bp 50.35 6.31 100.30
qh_2_scaffold_23507
Species: Salinarchaeum sp. Harcht-Bsk1 (50%)
2 1026 bp 66.67 13.55 100.29
qh_2_scaffold_11356
Order: Halobacteriales (50%)
4 1714 bp 71.12 12.60 100.29
qh_2_scaffold_23441
Species: Natronomonas pharaonis (50%)
2 1029 bp 71.82 11.86 100.29
qh_2_scaffold_15722
Species: halophilic archaeon J07HX64 (50%)
2 1373 bp 66.13 6.55 100.29
qh_2_scaffold_8475
Species: Haloarcula californiae (50%)
2 2064 bp 71.80 13.86 100.29
qh_2_scaffold_15621
Species: Halomicrobium mukohataei (50%)
2 1379 bp 74.91 10.80 100.29
qh_2_scaffold_23152
Species: Natronomonas moolapensis (50%)
2 1038 bp 69.46 9.54 100.29
qh_2_scaffold_29371
Species: Halanaeroarchaeum sulfurireducens (50%)
2 1388 bp 67.94 8.07 100.29
qh_2_scaffold_15469
Species: Candidatus Halobonum tyrrellensis (50%)
2 1388 bp 70.97 15.78 100.29
qh_2_scaffold_47176
Species: Haloterrigena limicola (50%)
2 1047 bp 67.34 7.07 100.29
qh_2_scaffold_22800
Species: Natronomonas pharaonis (50%)
2 1050 bp 71.71 30.48 100.29
qh_2_scaffold_22818
Species: Haladaptatus paucihalophilus (50%)
2 1050 bp 74.00 9.24 100.29
qh_2_scaffold_8210
Species: Natronococcus jeotgali (66.67%)
3 2103 bp 66.81 12.03 100.29
qh_2_scaffold_22629
Species: Haladaptatus paucihalophilus (100%)
2 1056 bp 68.28 7.10 100.28
qh_2_scaffold_15128
Species: Halobacterium salinarum (50%)
2 1409 bp 63.31 22.64 100.28
qh_2_scaffold_15079
Species: Halobiforma lacisalsi (50%)
2 1412 bp 71.39 25.00 100.28
qh_2_scaffold_18865
Species: Haloquadratum walsbyi (50%)
2 1768 bp 65.38 9.67 100.28
qh_2_scaffold_22204
Species: Halobiforma lacisalsi (50%)
2 1071 bp 73.30 18.67 100.28
qh_2_scaffold_26885
Species: Natronorubrum bangense (50%)
2 1439 bp 67.06 11.40 100.28
qh_2_scaffold_21924
Species: Natronobacterium gregoryi (50%)
2 1080 bp 71.30 11.67 100.28
qh_2_scaffold_21927 3 1080 bp 51.48 5.46 100.28
qh_2_scaffold_21759
Species: Natronomonas pharaonis (50%)
2 1086 bp 67.40 18.05 100.28
qh_2_scaffold_21688
Species: Natronomonas moolapensis (50%)
2 1089 bp 77.41 61.25 100.28
qh_2_scaffold_14258
Order: Halobacteriales (100%)
3 1469 bp 63.51 12.25 100.27
qh_2_scaffold_21215 2 1107 bp 57.90 15.54 100.27
qh_2_scaffold_10129
Order: Halobacteriales (60%)
5 1849 bp 71.55 66.14 100.27
qh_2_scaffold_36452
Species: Haloquadratum walsbyi (50%)
2 1110 bp 65.14 8.02 100.27
qh_2_scaffold_14028
Species: Haladaptatus paucihalophilus (50%)
2 1487 bp 69.40 10.56 100.27
qh_2_scaffold_21010
Species: Haladaptatus paucihalophilus (100%)
2 1116 bp 66.58 7.44 100.27
qh_2_scaffold_20996
Species: Geobacillus sp. Y412MC52 (50%)
2 1116 bp 47.94 6.09 100.27
qh_2_scaffold_20928
Species: Haladaptatus paucihalophilus (100%)
2 1119 bp 68.99 10.28 100.27
qh_2_scaffold_13877
Species: Stanieria cyanosphaera (50%)
2 1499 bp 55.97 6.87 100.27
qh_2_scaffold_20771
Species: Roseiflexus sp. RS-1 (50%)
2 1125 bp 50.93 4.27 100.27
qh_2_scaffold_14978
Species: Halorhabdus tiamatea (50%)
2 2250 bp 64.93 23.56 100.27
qh_2_scaffold_13838 3 1502 bp 55.46 9.52 100.27
qh_2_scaffold_20605
Species: Natronomonas moolapensis (50%)
2 1131 bp 73.83 19.54 100.27
qh_2_scaffold_20456
Species: Haloferax sp. ATCC BAA-645 (100%)
3 1137 bp 55.94 6.33 100.26
qh_2_scaffold_13609 3 1520 bp 56.91 19.54 100.26
qh_2_scaffold_13620
Species: Halococcus saccharolyticus (50%)
2 1520 bp 52.76 5.07 100.26
qh_2_scaffold_20375
Species: Halobacterium salinarum (50%)
2 1140 bp 70.35 8.42 100.26
Displaying items 451-500 of 21073 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.