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QH_6_UNK

In projects: QH_6  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 21.84 Longest contig: 86.52 Kbp Bin length: 43.49 Mbp GC content: 61.40 %
Contigs count: 17572 Features count: 56719 rRNAs count: 11 tRNAs count: 537

Genome completeness

megabin RP 45 / 55 MC: 35 BSCG 42 / 51 MC: 35 ASCG 38 / 38 MC: 38
Displaying items 601-650 of 17572 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_6_scaffold_14539 1 1432 bp 54.47 5.66 40.85
qh_6_scaffold_21224
Species: Leucobacter komagatae (100%)
1 1061 bp 62.30 5.66 99.81
qh_6_scaffold_7035 5 4074 bp 58.15 5.67 89.10
qh_6_scaffold_15854 6 2346 bp 55.41 5.67 96.80
qh_6_scaffold_22558
Species: GWA2_Bacteroidetes_40_15_curated (100%)
1 1006 bp 42.64 5.67 70.68
qh_6_scaffold_15883 3 1341 bp 53.39 5.67 78.08
qh_6_scaffold_8028 2 2116 bp 55.72 5.67 95.27
qh_6_scaffold_9115 3 1959 bp 55.49 5.67 67.23
qh_6_scaffold_7395 3 2223 bp 58.43 5.67 89.34
qh_6_scaffold_14354
Species: Halococcus thailandensis (66.67%)
3 1445 bp 55.29 5.67 85.12
qh_6_scaffold_21746 1 1040 bp 57.31 5.67 99.81
qh_6_scaffold_21292 2 1058 bp 56.33 5.67 109.45
qh_6_scaffold_19024 3 1163 bp 53.65 5.67 66.55
qh_6_scaffold_19724
Species: Haloarcula californiae (50%)
2 1130 bp 49.03 5.67 88.14
qh_6_scaffold_19038 2 1162 bp 64.72 5.68 95.27
qh_6_scaffold_15128
Species: RLO_RIF05_58_11 (50%)
2 1391 bp 61.61 5.68 97.27
qh_6_scaffold_10132
Domain: Bacteria (66.67%)
3 3573 bp 51.33 5.68 68.51
qh_6_scaffold_15671 3 1355 bp 52.55 5.68 79.04
qh_6_scaffold_15960 1 1337 bp 45.47 5.68 86.39
qh_6_scaffold_11141
Species: Branchiostoma floridae (50%)
2 1725 bp 56.64 5.68 100.87
qh_6_scaffold_16676 3 2044 bp 55.43 5.68 92.17
qh_6_scaffold_23515 3 1708 bp 32.14 5.68 53.57
qh_6_scaffold_13244 1 1531 bp 52.19 5.68 85.24
qh_6_scaffold_14661 1 1423 bp 56.43 5.69 95.29
qh_6_scaffold_30238 1 1458 bp 48.22 5.69 46.91
qh_6_scaffold_25607
Species: Natronorubrum tibetense (50%)
2 1829 bp 54.24 5.69 62.17
qh_6_scaffold_16522 3 2303 bp 57.14 5.69 45.72
qh_6_scaffold_9293 5 1932 bp 58.64 5.69 98.14
qh_6_scaffold_15166 2 1388 bp 50.86 5.69 77.81
qh_6_scaffold_18040
Species: Halorhabdus utahensis (100%)
1 1213 bp 52.35 5.69 95.96
qh_6_scaffold_22272 2 1018 bp 48.72 5.70 30.35
qh_6_scaffold_9590
Species: Environmental Halophage eHP-25 (100%)
1 1894 bp 57.23 5.70 99.95
qh_6_scaffold_11567
Species: Methanoculleus marisnigri (50%)
2 1685 bp 45.82 5.70 66.94
qh_6_scaffold_7405
Class: Gammaproteobacteria (66.67%)
3 2983 bp 44.45 5.70 89.91
qh_6_scaffold_11440 2 1698 bp 54.95 5.71 59.01
qh_6_scaffold_17222
Species: Halosimplex carlsbadense (50%)
2 1260 bp 53.73 5.71 99.52
qh_6_scaffold_7757
Species: Jejuia pallidilutea (50%)
2 2889 bp 59.88 5.71 72.59
qh_6_scaffold_38791
Order: Halobacteriales (66.67%)
3 1121 bp 52.81 5.71 88.58
qh_6_scaffold_17504 1 1243 bp 56.88 5.71 99.92
qh_6_scaffold_17063
Class: Halobacteria (50%)
4 2030 bp 51.23 5.71 77.14
qh_6_scaffold_8981
Order: Caudovirales (100%)
3 1978 bp 59.30 5.71 94.64
qh_6_scaffold_11784 4 1663 bp 61.21 5.71 84.97
qh_6_scaffold_6462
Domain: Viruses (50%)
4 2399 bp 54.69 5.71 77.16
qh_6_scaffold_21027 2 1069 bp 54.82 5.71 97.38
qh_6_scaffold_21044 1 1068 bp 43.73 5.71 78.93
qh_6_scaffold_9477
Species: Acanthamoeba castellanii (50%)
2 1910 bp 54.35 5.71 62.36
qh_6_scaffold_18146
Species: Halococcus morrhuae (50%)
2 1207 bp 59.73 5.72 96.44
qh_6_scaffold_17250
Species: Thermobrachium celere (50%)
2 1259 bp 59.09 5.72 99.13
qh_6_scaffold_13358 1 1521 bp 60.16 5.72 96.65
qh_6_scaffold_14744
Species: Haloarcula japonica (100%)
1 1417 bp 63.51 5.72 89.13
Displaying items 601-650 of 17572 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.