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QH_6_UNK

In projects: QH_6  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 21.84 Longest contig: 86.52 Kbp Bin length: 43.49 Mbp GC content: 61.40 %
Contigs count: 17572 Features count: 56719 rRNAs count: 11 tRNAs count: 537

Genome completeness

megabin RP 45 / 55 MC: 35 BSCG 42 / 51 MC: 35 ASCG 38 / 38 MC: 38
Displaying items 1251-1300 of 17572 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_6_scaffold_14910 4 1406 bp 55.26 6.33 86.63
qh_6_scaffold_20229 3 1105 bp 50.41 6.33 104.80
qh_6_scaffold_17699 4 1232 bp 65.18 6.33 81.57
qh_6_scaffold_7100 5 2274 bp 58.88 6.33 88.79
qh_6_scaffold_9331 10 5005 bp 53.73 6.33 57.84
qh_6_scaffold_19119
Species: Crassostrea gigas (50%)
2 2007 bp 56.45 6.33 88.94
qh_6_scaffold_13828
Species: RBG_13_Deltaproteobacteria_43_22_curated (50%)
2 1484 bp 50.34 6.33 99.66
qh_6_scaffold_7839 4 2148 bp 61.92 6.33 94.83
qh_6_scaffold_8542 4 2037 bp 57.24 6.33 95.73
qh_6_scaffold_11344
Class: Halobacteria (50%)
4 1706 bp 56.57 6.33 52.23
qh_6_scaffold_22420
Species: Stanieria cyanosphaera (50%)
2 1011 bp 56.78 6.33 89.32
qh_6_scaffold_19891 2 1121 bp 53.08 6.33 56.74
qh_6_scaffold_3122 4 4977 bp 54.51 6.33 71.13
qh_6_scaffold_18765 3 1784 bp 59.92 6.33 102.92
qh_6_scaffold_3998
Domain: Bacteria (80%)
5 4821 bp 52.91 6.33 99.13
qh_6_scaffold_6533
Order: Haloferacales (66.67%)
3 2386 bp 50.21 6.33 76.95
qh_6_scaffold_3800
Class: Halobacteria (71.43%)
7 5591 bp 54.78 6.33 69.59
qh_6_scaffold_9487 4 1908 bp 54.35 6.34 93.87
qh_6_scaffold_17673 6 1799 bp 62.03 6.34 83.88
qh_6_scaffold_17464 1 1246 bp 55.14 6.34 25.28
qh_6_scaffold_11015
Species: Rhodothermus marinus (100%)
3 1736 bp 62.62 6.34 81.57
qh_6_scaffold_15634
Species: Halorhabdus tiamatea (50%)
2 1357 bp 51.14 6.34 44.88
qh_6_scaffold_5243 3 2715 bp 56.17 6.34 63.09
qh_6_scaffold_6874 3 3044 bp 56.01 6.34 86.53
qh_6_scaffold_17062 4 2414 bp 49.01 6.34 99.92
qh_6_scaffold_11533
Domain: Bacteria (100%)
5 3878 bp 53.61 6.34 96.39
qh_6_scaffold_16153
Species: Natrinema gari (50%)
2 1324 bp 51.89 6.34 92.45
qh_6_scaffold_11316
Order: Natrialbales (50%)
6 4650 bp 52.80 6.34 94.00
qh_6_scaffold_10887 3 1750 bp 53.83 6.34 89.83
qh_6_scaffold_21726 1 1041 bp 50.24 6.34 59.65
qh_6_scaffold_16932
Species: Halococcus saccharolyticus (50%)
2 1278 bp 67.14 6.34 86.39
qh_6_scaffold_7007 4 5603 bp 51.94 6.34 47.44
qh_6_scaffold_18331 2 1198 bp 54.26 6.34 30.30
qh_6_scaffold_21354 1 1055 bp 53.27 6.35 21.61
qh_6_scaffold_23705 2 1639 bp 53.39 6.35 65.71
qh_6_scaffold_11225
Species: Halorubrum phage GNf2 (66.67%)
3 1717 bp 62.49 6.35 94.70
qh_6_scaffold_18374
Species: Halococcus morrhuae (50%)
2 1196 bp 48.66 6.35 51.42
qh_6_scaffold_2673
Phylum: Cyanobacteria (50%)
4 3875 bp 39.10 6.35 83.15
qh_6_scaffold_2798 3 3782 bp 55.21 6.35 89.87
qh_6_scaffold_16092 3 2047 bp 55.35 6.35 70.79
qh_6_scaffold_23931
Species: Haladaptatus paucihalophilus (50%)
2 1779 bp 59.58 6.35 94.44
qh_6_scaffold_10141 3 1828 bp 56.24 6.35 51.86
qh_6_scaffold_1337 5 5539 bp 56.04 6.35 76.10
qh_6_scaffold_10903
Species: Salinibacter ruber (66.67%)
3 1748 bp 51.20 6.35 83.75
qh_6_scaffold_1367
Order: Natrialbales (50%)
6 6630 bp 50.18 6.35 73.94
qh_6_scaffold_20587
Species: RIFOXYB2_FULL_Elusimicrobia_49_7_curated (50%)
2 1087 bp 52.99 6.35 114.26
qh_6_scaffold_21749 3 1040 bp 61.92 6.35 59.71
qh_6_scaffold_13709
Species: Haloferax volcanii (100%)
1 1495 bp 45.02 6.35 99.73
qh_6_scaffold_20658 1 1085 bp 51.52 6.36 80.74
qh_6_scaffold_13518
Species: GWC1_OP11_47_15 (100%)
1 1509 bp 48.44 6.36 34.79
Displaying items 1251-1300 of 17572 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.