ggKbase home page
Advanced Search
Search Help

QH_6_UNK

In projects: QH_6  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 21.84 Longest contig: 86.52 Kbp Bin length: 43.49 Mbp GC content: 61.40 %
Contigs count: 17572 Features count: 56719 rRNAs count: 11 tRNAs count: 537

Genome completeness

megabin RP 45 / 55 MC: 35 BSCG 42 / 51 MC: 35 ASCG 38 / 38 MC: 38
Displaying items 1451-1500 of 17572 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_6_scaffold_15058
Species: Haloarcula amylolytica (100%)
1 1396 bp 54.15 6.45 32.88
qh_6_scaffold_19669 1 1131 bp 55.53 6.45 100.00
qh_6_scaffold_10711
Species: Streptomyces bingchenggensis (50%)
2 1768 bp 53.11 6.45 100.11
qh_6_scaffold_1995 5 4510 bp 52.82 6.45 56.94
qh_6_scaffold_9249 4 1939 bp 64.72 6.45 98.40
qh_6_scaffold_17883 3 1222 bp 56.38 6.46 60.39
qh_6_scaffold_11203
Species: Natronolimnobius innermongolicus (50%)
2 1719 bp 45.14 6.46 77.31
qh_6_scaffold_11673
Species: Haloterrigena salina (100%)
1 1673 bp 56.60 6.46 76.93
qh_6_scaffold_3468 9 5542 bp 53.95 6.46 71.56
qh_6_scaffold_16291 4 2136 bp 56.46 6.46 95.22
qh_6_scaffold_20679 3 1084 bp 35.98 6.46 100.74
qh_6_scaffold_6175
Domain: Eukaryota (50%)
4 4687 bp 55.32 6.46 93.07
qh_6_scaffold_21425 3 1052 bp 60.84 6.46 87.55
qh_6_scaffold_19361
Species: Candidatus Entotheonella sp. TSY1 (100%)
1 1146 bp 62.91 6.46 100.00
qh_6_scaffold_8070
Order: Halobacteriales (50%)
6 2940 bp 52.59 6.46 62.04
qh_6_scaffold_5772 2 2568 bp 46.65 6.46 54.21
qh_6_scaffold_32415 3 1254 bp 61.64 6.46 64.83
qh_6_scaffold_17579 2 1239 bp 59.32 6.46 42.86
qh_6_scaffold_20349
Species: Synechococcus sp. PCC 7502 (50%)
2 1099 bp 57.87 6.46 99.91
qh_6_scaffold_21057
Species: Gemmatimonadetes bacterium KBS708 (100%)
1 1068 bp 67.51 6.46 99.72
qh_6_scaffold_8616 1 2027 bp 54.96 6.46 81.70
qh_6_scaffold_14631 2 1425 bp 47.23 6.46 36.42
qh_6_scaffold_19726 1 1128 bp 56.56 6.47 14.36
qh_6_scaffold_15841
Species: Haloferax volcanii (50%)
2 1344 bp 57.59 6.47 100.22
qh_6_scaffold_13079
Species: Natronomonas moolapensis (50%)
2 1546 bp 43.08 6.47 78.40
qh_6_scaffold_11789
Class: Halobacteria (80%)
5 2551 bp 52.41 6.47 72.44
qh_6_scaffold_5565 8 5102 bp 54.80 6.47 81.62
qh_6_scaffold_1878 10 5286 bp 39.88 6.47 78.15
qh_6_scaffold_6545 10 8717 bp 56.74 6.47 95.09
qh_6_scaffold_2647 7 4745 bp 56.46 6.47 71.44
qh_6_scaffold_7477
Species: Aphanomyces astaci (50%)
2 2211 bp 56.67 6.47 93.22
qh_6_scaffold_21794 1 1854 bp 55.23 6.47 55.18
qh_6_scaffold_17668 1 1234 bp 50.16 6.48 21.39
qh_6_scaffold_6363
Class: Halobacteria (50%)
4 2421 bp 62.91 6.48 98.76
qh_6_scaffold_1147 5 6076 bp 53.85 6.48 79.94
qh_6_scaffold_19765 1 1126 bp 48.05 6.48 7.19
qh_6_scaffold_14932
Species: Muricauda ruestringensis (50%)
2 1405 bp 46.98 6.48 90.96
qh_6_scaffold_14710
Species: Halogranum salarium (50%)
2 1420 bp 56.55 6.48 90.42
qh_6_scaffold_15638
Order: Haloferacales (66.67%)
3 1357 bp 54.90 6.48 62.12
qh_6_scaffold_6015 3 3072 bp 58.56 6.48 66.11
qh_6_scaffold_12070 3 1636 bp 58.25 6.48 90.77
qh_6_scaffold_12771
Species: Entamoeba invadens (50%)
2 1573 bp 58.42 6.48 97.08
qh_6_scaffold_5624 4 2607 bp 55.77 6.48 74.91
qh_6_scaffold_17402 1 1250 bp 44.40 6.48 22.56
qh_6_scaffold_17943 3 1218 bp 52.13 6.49 85.71
qh_6_scaffold_14732
Order: Natrialbales (66.67%)
3 1418 bp 58.82 6.49 89.07
qh_6_scaffold_1844 7 4712 bp 53.35 6.49 66.85
qh_6_scaffold_21908
Species: Natrinema altunense (50%)
2 1033 bp 51.02 6.49 58.08
qh_6_scaffold_16387
Species: Salinibacter ruber (100%)
1 1310 bp 51.53 6.49 50.38
qh_6_scaffold_21939
Species: RBG_16_Deltaproteobacteria_47_11_curated (50%)
2 1032 bp 47.67 6.49 44.77
Displaying items 1451-1500 of 17572 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.