ggKbase home page
Advanced Search
Search Help

QH_6_UNK

In projects: QH_6  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 21.84 Longest contig: 86.52 Kbp Bin length: 43.49 Mbp GC content: 61.40 %
Contigs count: 17572 Features count: 56719 rRNAs count: 11 tRNAs count: 537

Genome completeness

megabin RP 45 / 55 MC: 35 BSCG 42 / 51 MC: 35 ASCG 38 / 38 MC: 38
Displaying items 201-250 of 17572 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_6_scaffold_4609
Species: Natronomonas moolapensis (80%)
5 2922 bp 75.12 51.75 100.82
qh_6_scaffold_12474
Species: Halopiger xanaduensis (50%)
2 1598 bp 62.33 6.95 100.81
qh_6_scaffold_18550
Genus: Natronorubrum (66.67%)
3 2247 bp 71.43 36.89 100.80
qh_6_scaffold_10755
Order: Halobacteriales (60%)
5 1762 bp 68.33 12.26 100.79
qh_6_scaffold_11734 3 1667 bp 41.87 10.32 100.78
qh_6_scaffold_10111
Species: Candidatus Pelagibacter ubique (50%)
2 2471 bp 45.16 6.03 100.77
qh_6_scaffold_16446
Domain: Bacteria (100%)
3 1307 bp 45.91 5.36 100.76
qh_6_scaffold_21539
Species: Haloferax elongans (50%)
2 1048 bp 70.04 10.88 100.76
qh_6_scaffold_18587
Species: Natronomonas moolapensis (100%)
2 1185 bp 71.98 26.75 100.76
qh_6_scaffold_21237
Species: halophilic archaeon DL31 (50%)
2 1060 bp 55.75 21.79 100.76
qh_6_scaffold_13919
Species: Halococcus saccharolyticus (66.67%)
3 1477 bp 67.57 14.83 100.74
qh_6_scaffold_20679 3 1084 bp 35.98 6.46 100.74
qh_6_scaffold_23550
Species: Candidatus Halobonum tyrrellensis (50%)
2 1763 bp 70.11 17.47 100.74
qh_6_scaffold_15538
Species: Natronomonas pharaonis (100%)
2 1364 bp 73.68 80.87 100.73
qh_6_scaffold_15167
Species: uncultured archaeon A07HR67 (100%)
3 1388 bp 57.56 8.93 100.72
qh_6_scaffold_9656
Genus: Haloquadratum (50%)
4 2645 bp 62.00 6.28 100.72
qh_6_scaffold_19274
Species: Natrialba magadii (100%)
2 1150 bp 53.39 22.43 100.70
qh_6_scaffold_22528
Species: Halosimplex carlsbadense (50%)
2 1007 bp 74.68 23.83 100.70
qh_6_scaffold_14216
Species: Natronomonas moolapensis (50%)
2 1454 bp 69.53 23.66 100.69
qh_6_scaffold_22531
Species: halophilic archaeon J07HX5 (66.67%)
3 1460 bp 72.19 12.74 100.69
qh_6_scaffold_18932
Species: Haloferax mucosum (50%)
2 1168 bp 66.95 10.02 100.69
qh_6_scaffold_16129
Species: Halomicrobium mukohataei (50%)
2 1326 bp 69.00 13.57 100.68
qh_6_scaffold_6892
Order: Natrialbales (75%)
4 3281 bp 68.45 23.44 100.67
qh_6_scaffold_21212 3 1061 bp 68.52 20.36 100.66
qh_6_scaffold_15894
Species: Natronococcus occultus (50%)
2 2134 bp 68.18 16.59 100.66
qh_6_scaffold_15083
Species: Salinibacter ruber (100%)
2 2134 bp 67.10 12.75 100.66
qh_6_scaffold_17021 2 2444 bp 56.83 6.87 100.66
qh_6_scaffold_12925
Species: Candidatus Methanoperedens nitroreducens (50%)
2 1559 bp 57.41 7.83 100.64
qh_6_scaffold_20452
Species: Halococcus saccharolyticus (50%)
2 1094 bp 70.20 10.69 100.64
qh_6_scaffold_13198
Species: Halorubrum lipolyticum (50%)
4 2823 bp 65.00 16.90 100.64
qh_6_scaffold_20126
Species: Natronomonas moolapensis (50%)
2 1109 bp 70.24 47.70 100.63
qh_6_scaffold_12507
Species: Haloferax sp. ATCC BAA-645 (50%)
2 1595 bp 50.16 9.03 100.63
qh_6_scaffold_16917
Species: Natrinema altunense (66.67%)
3 1279 bp 70.60 9.85 100.63
qh_6_scaffold_19817
Species: Natrinema altunense (50%)
2 1124 bp 69.48 5.78 100.62
qh_6_scaffold_7014
Order: Halobacteriales (60%)
5 2290 bp 69.74 11.18 100.61
qh_6_scaffold_19263 2 1151 bp 45.26 12.08 100.61
qh_6_scaffold_19086
Species: Natrialba magadii (50%)
2 1160 bp 54.91 16.90 100.60
qh_6_scaffold_13353
Species: Halosimplex carlsbadense (100%)
2 1521 bp 66.27 14.79 100.59
qh_6_scaffold_13327
Species: Haloferax mediterranei (50%)
2 1524 bp 73.49 19.42 100.59
qh_6_scaffold_9838
Species: Natronomonas pharaonis (66.67%)
3 1864 bp 66.63 24.36 100.59
qh_6_scaffold_6576
Class: Halobacteria (66.67%)
3 2377 bp 48.76 8.50 100.59
qh_6_scaffold_3561 3 4626 bp 55.38 7.33 100.58
qh_6_scaffold_5701
Species: halophilic archaeon DL31 (100%)
4 2589 bp 61.84 9.39 100.58
qh_6_scaffold_12979
Species: Halosimplex carlsbadense (100%)
2 1554 bp 65.44 7.66 100.58
qh_6_scaffold_21714
Species: Natronomonas moolapensis (50%)
2 1041 bp 68.59 66.19 100.58
qh_6_scaffold_15139
Species: Salinibacter ruber (66.67%)
3 1390 bp 70.72 29.50 100.58
qh_6_scaffold_17956
Species: Halovirus HCTV-5 (100%)
2 1217 bp 49.96 5.42 100.57
qh_6_scaffold_14962
Species: Natronorubrum tibetense (50%)
2 1933 bp 58.82 13.30 100.57
qh_6_scaffold_9122
Species: Haloarcula sinaiiensis (66.67%)
3 1957 bp 69.95 70.72 100.56
qh_6_scaffold_20983
Species: Halobacterium sp. DL1 (50%)
2 1071 bp 61.06 6.82 100.56
Displaying items 201-250 of 17572 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.