ggKbase home page
Advanced Search
Search Help

QH_7_UNK

In projects: QH_7  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 25.29 Longest contig: 83.04 Kbp Bin length: 52.16 Mbp GC content: 60.76 %
Contigs count: 21495 Features count: 67681 rRNAs count: 18 tRNAs count: 616

Genome completeness

megabin RP 53 / 55 MC: 42 BSCG 42 / 51 MC: 32 ASCG 38 / 38 MC: 38
Displaying items 401-450 of 21495 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_7_scaffold_21530
Species: Halococcus morrhuae (50%)
2 1119 bp 59.07 8.05 33.24
qh_7_scaffold_42463 1 1164 bp 52.41 6.19 33.25
qh_7_scaffold_20152 1 1173 bp 58.06 6.05 33.25
qh_7_scaffold_13510 3 2426 bp 51.40 6.31 33.26
qh_7_scaffold_36739 2 1567 bp 48.31 6.83 33.31
qh_7_scaffold_20945 2 1142 bp 50.26 7.53 33.36
qh_7_scaffold_34452
Species: Halorubrum lipolyticum (100%)
1 1582 bp 50.19 4.80 33.38
qh_7_scaffold_21213
Species: Lepisosteus oculatus (100%)
1 1132 bp 54.68 6.98 33.39
qh_7_scaffold_39851 1 1356 bp 60.25 24.04 33.41
qh_7_scaffold_5492 3 3857 bp 53.54 6.25 33.45
qh_7_scaffold_21287 1 1129 bp 48.80 5.49 33.48
qh_7_scaffold_7177 4 2349 bp 55.64 26.22 33.59
qh_7_scaffold_12095 2 1679 bp 59.50 18.70 33.77
qh_7_scaffold_19445
Species: Salinibacter ruber (100%)
1 1205 bp 56.18 9.29 33.86
qh_7_scaffold_10772
Species: Natronomonas pharaonis (50%)
2 1811 bp 67.64 34.24 33.96
qh_7_scaffold_20342 2 1166 bp 31.99 5.23 33.96
qh_7_scaffold_14167 2 1509 bp 52.62 7.89 34.00
qh_7_scaffold_7240 5 3493 bp 49.58 7.13 34.01
qh_7_scaffold_35430
Species: Tolypothrix bouteillei (100%)
1 2107 bp 42.62 305.22 34.03
qh_7_scaffold_23216 1 1057 bp 42.95 3.50 34.06
qh_7_scaffold_8478
Species: CSP1_4_Chloroflexi (50%)
2 2114 bp 68.50 11.64 34.06
qh_7_scaffold_20685 2 1153 bp 56.46 6.50 34.09
qh_7_scaffold_24301
Species: Halalkalicoccus jeotgali (50%)
2 1019 bp 54.27 7.56 34.15
qh_7_scaffold_6049 3 2625 bp 57.79 8.27 34.17
qh_7_scaffold_7343 3 2315 bp 52.44 11.92 34.21
qh_7_scaffold_7476
Species: Halococcus hamelinensis (50%)
4 2288 bp 56.25 14.16 34.22
qh_7_scaffold_26126
Species: Halostagnicola larsenii (50%)
4 1554 bp 59.07 11.13 34.23
qh_7_scaffold_8199 2 2161 bp 37.39 22.17 34.29
qh_7_scaffold_12491
Species: Jeotgalibacillus alimentarius (50%)
2 2623 bp 57.80 8.54 34.31
qh_7_scaffold_21864
Species: Halococcus saccharolyticus (100%)
2 2289 bp 57.01 10.05 34.34
qh_7_scaffold_28625 1 1756 bp 47.38 44.61 34.34
qh_7_scaffold_22782
Species: Salinibacter ruber (100%)
1 1073 bp 61.42 34.70 34.39
qh_7_scaffold_42977
Species: Halococcus saccharolyticus (50%)
2 1212 bp 60.97 8.75 34.41
qh_7_scaffold_16003 2 1386 bp 36.08 21.57 34.42
qh_7_scaffold_23033
Species: Halosimplex carlsbadense (50%)
2 1063 bp 73.66 16.37 34.43
qh_7_scaffold_23215 2 1869 bp 41.57 4.82 34.51
qh_7_scaffold_2224 4 5064 bp 48.80 7.39 34.54
qh_7_scaffold_3908 3 3491 bp 48.98 11.69 34.55
qh_7_scaffold_13165 1 1588 bp 54.72 7.68 34.57
qh_7_scaffold_17790
Species: Halorubrum terrestre (50%)
2 1284 bp 50.86 9.89 34.58
qh_7_scaffold_15892
Species: Halobacterium salinarum (50%)
2 2532 bp 41.07 6.20 34.60
qh_7_scaffold_12878
Species: Haloquadratum walsbyi (50%)
2 1612 bp 51.67 15.45 34.62
qh_7_scaffold_4604 4 3132 bp 53.83 7.28 34.67
qh_7_scaffold_20939 2 1142 bp 54.82 6.57 34.68
qh_7_scaffold_7817
Domain: Bacteria (50%)
4 2680 bp 44.29 98.92 34.70
qh_7_scaffold_10356 3 1858 bp 39.34 35.79 34.71
qh_7_scaffold_15135 2 1443 bp 52.74 7.14 34.72
qh_7_scaffold_12040
Species: Salinibacter ruber (100%)
2 1684 bp 59.38 19.83 34.74
qh_7_scaffold_23060 2 1062 bp 60.26 4.90 34.75
qh_7_scaffold_11485 2 1735 bp 48.47 5.82 34.76
Displaying items 401-450 of 21495 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.