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QH_9_UNK

In projects: QH_9  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 22.86 Longest contig: 67.25 Kbp Bin length: 50.11 Mbp GC content: 61.51 %
Contigs count: 22383 Features count: 65940 rRNAs count: 15 tRNAs count: 0

Genome completeness

megabin RP 51 / 55 MC: 48 BSCG 44 / 51 MC: 40 ASCG 38 / 38 MC: 38
Displaying items 22001-22050 of 22383 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_9_scaffold_41572 3 1283 bp 50.58 4.60 72.02
qh_9_scaffold_26328
Species: Sorangium cellulosum (100%)
1 1001 bp 65.03 4.60 99.80
qh_9_scaffold_5390
Species: uncultured haloarchaeon (50%)
2 2737 bp 33.32 4.60 100.29
qh_9_scaffold_28488 3 1546 bp 53.30 4.59 90.43
qh_9_scaffold_10024 5 2875 bp 34.12 4.59 91.93
qh_9_scaffold_26284
Species: Lyngbya aestuarii (100%)
1 1002 bp 50.80 4.59 99.70
qh_9_scaffold_23425 2 1090 bp 50.09 4.59 84.77
qh_9_scaffold_20494 1 1199 bp 58.88 4.59 99.83
qh_9_scaffold_8242
Species: Strongylocentrotus purpuratus (50%)
2 2136 bp 54.35 4.59 97.75
qh_9_scaffold_11982 1 1700 bp 55.12 4.59 3.71
qh_9_scaffold_11272 3 1764 bp 56.01 4.59 94.56
qh_9_scaffold_18535
Class: Halobacteria (75%)
4 1879 bp 42.68 4.58 98.99
qh_9_scaffold_21558 3 1158 bp 57.08 4.58 83.42
qh_9_scaffold_17632 3 2207 bp 50.79 4.58 57.23
qh_9_scaffold_35047
Species: Pararge aegeria (50%)
2 2250 bp 51.47 4.58 39.60
qh_9_scaffold_18377 3 1289 bp 54.00 4.58 88.91
qh_9_scaffold_20971 3 1180 bp 48.31 4.58 76.78
qh_9_scaffold_24702
Species: halophilic archaeon J07HX5 (50%)
2 1049 bp 34.32 4.58 91.52
qh_9_scaffold_17966 3 1310 bp 56.72 4.58 52.67
qh_9_scaffold_24720
Species: BJP_IG2157_Anaerolineales_55_23 (100%)
1 1049 bp 37.85 4.58 99.81
qh_9_scaffold_22785
Species: Rhodothermus marinus (100%)
1 1114 bp 64.18 4.58 99.64
qh_9_scaffold_17083 1 1354 bp 46.01 4.58 65.81
qh_9_scaffold_21511
Species: CG_Ignavi_02 (50%)
2 1159 bp 49.27 4.57 100.17
qh_9_scaffold_20369
Species: Synechococcus sp. PCC 7335 (50%)
2 1204 bp 61.13 4.57 101.41
qh_9_scaffold_17028 3 1356 bp 33.55 4.57 86.95
qh_9_scaffold_43342 2 1314 bp 52.89 4.57 89.27
qh_9_scaffold_4555 5 3024 bp 35.78 4.56 84.72
qh_9_scaffold_40647
Species: Halosimplex carlsbadense (100%)
1 1206 bp 53.40 4.56 80.10
qh_9_scaffold_17412 3 1337 bp 43.98 4.56 101.20
qh_9_scaffold_17803 3 1318 bp 55.08 4.55 89.91
qh_9_scaffold_25250
Species: Natronomonas pharaonis (50%)
2 1032 bp 50.97 4.55 82.27
qh_9_scaffold_11356 2 1757 bp 42.86 4.55 91.01
qh_9_scaffold_17405
Domain: Bacteria (100%)
3 2042 bp 60.33 4.55 75.07
qh_9_scaffold_25952 2 1012 bp 57.51 4.55 88.34
qh_9_scaffold_14690
Species: Natrinema gari (66.67%)
3 1494 bp 43.24 4.55 86.14
qh_9_scaffold_23224 2 1098 bp 36.52 4.55 96.99
qh_9_scaffold_18251
Species: Paenibacillus curdlanolyticus (100%)
1 1296 bp 46.60 4.55 78.70
qh_9_scaffold_25140
Species: Tetranychus urticae (100%)
1 1035 bp 58.55 4.54 100.00
qh_9_scaffold_18652 1 1277 bp 52.55 4.54 99.84
qh_9_scaffold_20758
Species: halophilic archaeon DL31 (100%)
2 1189 bp 51.39 4.54 100.17
qh_9_scaffold_10420 3 1849 bp 40.94 4.54 90.54
qh_9_scaffold_11073 2 1784 bp 54.04 4.54 83.41
qh_9_scaffold_32892
Species: Aciduliprofundum sp. MAR08-339 (50%)
2 1635 bp 46.36 4.53 102.94
qh_9_scaffold_6083
Species: Schizophyllum commune (50%)
2 2560 bp 49.02 4.53 98.09
qh_9_scaffold_32033 3 1588 bp 55.29 4.53 90.11
qh_9_scaffold_23710 1 1081 bp 55.78 4.53 99.91
qh_9_scaffold_10809 3 1809 bp 57.05 4.53 75.79
qh_9_scaffold_10379
Species: Tetrahymena thermophila (100%)
1 1854 bp 54.64 4.53 99.84
qh_9_scaffold_21867 2 1147 bp 48.39 4.53 89.71
qh_9_scaffold_19602 2 1235 bp 32.71 4.53 62.19
Displaying items 22001-22050 of 22383 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.