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QH_10_UNK

In projects: QH_10

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 20.81 Longest contig: 99.48 Kbp Bin length: 62.59 Mbp GC content: 61.29 %
Contigs count: 23910 Features count: 79125 rRNAs count: 20 tRNAs count: 0

Genome completeness

megabin RP 54 / 55 MC: 52 BSCG 49 / 51 MC: 47 ASCG 38 / 38 MC: 38
Displaying items 51-100 of 23910 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_10_scaffold_18345
Phylum: Bacteroidetes (60%)
5 2740 bp 58.03 56.13 105.44
qh_10_scaffold_14059
Species: Salinibacter ruber (50%)
2 1787 bp 62.90 23.84 105.43
qh_10_scaffold_26478 2 1085 bp 71.98 8.11 105.35
qh_10_scaffold_45855
Species: Salinarchaeum sp. Harcht-Bsk1 (66.67%)
3 1109 bp 64.65 8.48 105.23
qh_10_scaffold_18396
Species: Salinibacter ruber (100%)
2 1466 bp 69.85 13.17 105.18
qh_10_scaffold_27995
Species: Salinibacter ruber (100%)
3 1638 bp 66.30 21.37 105.13
qh_10_scaffold_19153
Class: Halobacteria (100%)
3 1419 bp 54.97 22.06 105.07
qh_10_scaffold_39356
Species: Rhodothermus marinus (50%)
2 1205 bp 74.85 12.37 105.06
qh_10_scaffold_50832
Species: Salinibacter ruber (100%)
2 1018 bp 65.52 67.29 104.91
qh_10_scaffold_42855
Species: Candidatus Contendobacter odensis (50%)
2 1217 bp 61.05 10.68 104.77
qh_10_scaffold_47398
Species: Haloarcula amylolytica (50%)
2 1134 bp 73.46 11.11 104.76
qh_10_scaffold_27939
Species: Halobiforma lacisalsi (50%)
2 1038 bp 55.39 4.53 104.62
qh_10_scaffold_43621
Species: Halobacterium sp. DL1 (50%)
2 1173 bp 63.85 11.42 104.60
qh_10_scaffold_14220
Domain: Bacteria (100%)
3 1772 bp 58.86 5.59 104.46
qh_10_scaffold_26197
Species: Salinibacter ruber (50%)
2 1095 bp 61.55 6.67 104.38
qh_10_scaffold_36369
Species: Salinibacter ruber (100%)
2 1292 bp 67.96 12.85 104.02
qh_10_scaffold_39989
Species: Halorubrum sp. AJ67 (50%)
2 1145 bp 70.57 41.05 104.02
qh_10_scaffold_28677
Species: Natrinema pellirubrum (50%)
2 1016 bp 57.97 8.27 103.94
qh_10_scaffold_44527 3 1184 bp 61.74 6.67 103.89
qh_10_scaffold_27352
Species: Spiribacter salinus (50%)
2 1577 bp 70.70 7.42 103.87
qh_10_scaffold_18688
Species: halophilic archaeon J07HX5 (50%)
2 1450 bp 61.24 9.52 103.86
qh_10_scaffold_25733
Domain: Bacteria (75%)
4 1113 bp 57.32 78.89 103.77
qh_10_scaffold_34685
Species: Salinibacter ruber (66.67%)
3 1562 bp 63.32 7.67 103.71
qh_10_scaffold_25159
Species: Halogeometricum pallidum (50%)
2 1539 bp 66.73 11.24 103.70
qh_10_scaffold_19084
Phylum: Euryarchaeota (50%)
4 2676 bp 67.79 9.90 103.70
qh_10_scaffold_21359
Phylum: Parcubacteria (66.67%)
3 1302 bp 41.32 4.53 103.69
qh_10_scaffold_40775
Species: Halogeometricum borinquense (50%)
2 1155 bp 69.44 13.25 103.64
qh_10_scaffold_27311
Species: Haloferax gibbonsii (50%)
2 1057 bp 62.82 10.50 103.60
qh_10_scaffold_29444
Species: Halarchaeum acidiphilum (50%)
2 1542 bp 62.00 14.66 103.50
qh_10_scaffold_22151
Species: Thermobaculum terrenum (50%)
2 1264 bp 56.25 5.38 103.48
qh_10_scaffold_41194
Class: Halobacteria (66.67%)
3 1325 bp 70.49 16.23 103.47
qh_10_scaffold_18794
Species: RIFOXYD12_FULL_Ignavibacteria_36_8_curated (50%)
2 1444 bp 71.05 10.94 103.46
qh_10_scaffold_35191
Species: Harpegnathos saltator (50%)
2 1529 bp 57.82 7.13 103.40
qh_10_scaffold_28849
Species: Halosimplex carlsbadense (50%)
2 1010 bp 69.70 6.83 103.37
qh_10_scaffold_16638
Species: halophilic archaeon DL31 (50%)
2 1582 bp 72.12 20.61 103.35
qh_10_scaffold_25261
Species: Plesiocystis pacifica (50%)
2 1130 bp 55.13 8.94 103.27
qh_10_scaffold_29791
Species: Salinibacter ruber (100%)
2 1418 bp 67.70 13.96 103.24
qh_10_scaffold_37922
Species: Natrinema altunense (50%)
2 1421 bp 69.81 11.19 103.24
qh_10_scaffold_28050
Species: Salinibacter ruber (50%)
2 1035 bp 62.51 9.95 103.19
qh_10_scaffold_35761
Order: Halobacteriales (75%)
4 1326 bp 63.73 11.01 103.17
qh_10_scaffold_20245
Species: RLO_Rokubacteria_71_22 (50%)
2 1358 bp 55.45 4.71 103.17
qh_10_scaffold_38537
Species: Sorangium cellulosum (50%)
2 1268 bp 70.82 11.04 103.16
qh_10_scaffold_41650
Species: Haloferax denitrificans (50%)
2 1056 bp 73.39 28.22 103.13
qh_10_scaffold_19296
Phylum: Cyanobacteria (66.67%)
3 1411 bp 65.70 6.52 103.12
qh_10_scaffold_23816 3 1188 bp 63.38 5.72 103.03
qh_10_scaffold_24010
Species: Rubrobacter xylanophilus (50%)
2 1666 bp 63.93 10.92 103.00
qh_10_scaffold_33606
Species: Natronorubrum tibetense (50%)
2 1334 bp 67.92 27.96 103.00
qh_10_scaffold_42733
Species: Toxoplasma gondii (50%)
2 1235 bp 55.55 8.58 103.00
qh_10_scaffold_41204
Species: Anaerophaga thermohalophila (50%)
2 1221 bp 62.74 8.52 102.95
qh_10_scaffold_33983
Species: Halorubrum coriense (50%)
2 1379 bp 74.84 18.64 102.90
Displaying items 51-100 of 23910 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.