ggKbase | organisms

QH_10_UNK

In projects: QH_10

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 20.81 Longest contig: 99.48 Kbp Bin length: 62.59 Mbp GC content: 61.29 %

Contigs count: 23910 Features count: 79125 rRNAs count: 20 tRNAs count: 0

Genome completeness

megabin RP 54 / 55 MC: 52 BSCG 49 / 51 MC: 47 ASCG 38 / 38 MC: 38

Displaying items 51-100 of 23910 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
qh_10_scaffold_18345 Phylum: Bacteroidetes (60%)	5	2740 bp	58.03	56.13	105.44
qh_10_scaffold_14059 Species: Salinibacter ruber (50%)	2	1787 bp	62.90	23.84	105.43
qh_10_scaffold_26478	2	1085 bp	71.98	8.11	105.35
qh_10_scaffold_45855 Species: Salinarchaeum sp. Harcht-Bsk1 (66.67%)	3	1109 bp	64.65	8.48	105.23
qh_10_scaffold_18396 Species: Salinibacter ruber (100%)	2	1466 bp	69.85	13.17	105.18
qh_10_scaffold_27995 Species: Salinibacter ruber (100%)	3	1638 bp	66.30	21.37	105.13
qh_10_scaffold_19153 Class: Halobacteria (100%)	3	1419 bp	54.97	22.06	105.07
qh_10_scaffold_39356 Species: Rhodothermus marinus (50%)	2	1205 bp	74.85	12.37	105.06
qh_10_scaffold_50832 Species: Salinibacter ruber (100%)	2	1018 bp	65.52	67.29	104.91
qh_10_scaffold_42855 Species: Candidatus Contendobacter odensis (50%)	2	1217 bp	61.05	10.68	104.77
qh_10_scaffold_47398 Species: Haloarcula amylolytica (50%)	2	1134 bp	73.46	11.11	104.76
qh_10_scaffold_27939 Species: Halobiforma lacisalsi (50%)	2	1038 bp	55.39	4.53	104.62
qh_10_scaffold_43621 Species: Halobacterium sp. DL1 (50%)	2	1173 bp	63.85	11.42	104.60
qh_10_scaffold_14220 Domain: Bacteria (100%)	3	1772 bp	58.86	5.59	104.46
qh_10_scaffold_26197 Species: Salinibacter ruber (50%)	2	1095 bp	61.55	6.67	104.38
qh_10_scaffold_36369 Species: Salinibacter ruber (100%)	2	1292 bp	67.96	12.85	104.02
qh_10_scaffold_39989 Species: Halorubrum sp. AJ67 (50%)	2	1145 bp	70.57	41.05	104.02
qh_10_scaffold_28677 Species: Natrinema pellirubrum (50%)	2	1016 bp	57.97	8.27	103.94
qh_10_scaffold_44527	3	1184 bp	61.74	6.67	103.89
qh_10_scaffold_27352 Species: Spiribacter salinus (50%)	2	1577 bp	70.70	7.42	103.87
qh_10_scaffold_18688 Species: halophilic archaeon J07HX5 (50%)	2	1450 bp	61.24	9.52	103.86
qh_10_scaffold_25733 Domain: Bacteria (75%)	4	1113 bp	57.32	78.89	103.77
qh_10_scaffold_34685 Species: Salinibacter ruber (66.67%)	3	1562 bp	63.32	7.67	103.71
qh_10_scaffold_25159 Species: Halogeometricum pallidum (50%)	2	1539 bp	66.73	11.24	103.70
qh_10_scaffold_19084 Phylum: Euryarchaeota (50%)	4	2676 bp	67.79	9.90	103.70
qh_10_scaffold_21359 Phylum: Parcubacteria (66.67%)	3	1302 bp	41.32	4.53	103.69
qh_10_scaffold_40775 Species: Halogeometricum borinquense (50%)	2	1155 bp	69.44	13.25	103.64
qh_10_scaffold_27311 Species: Haloferax gibbonsii (50%)	2	1057 bp	62.82	10.50	103.60
qh_10_scaffold_29444 Species: Halarchaeum acidiphilum (50%)	2	1542 bp	62.00	14.66	103.50
qh_10_scaffold_22151 Species: Thermobaculum terrenum (50%)	2	1264 bp	56.25	5.38	103.48
qh_10_scaffold_41194 Class: Halobacteria (66.67%)	3	1325 bp	70.49	16.23	103.47
qh_10_scaffold_18794 Species: RIFOXYD12_FULL_Ignavibacteria_36_8_curated (50%)	2	1444 bp	71.05	10.94	103.46
qh_10_scaffold_35191 Species: Harpegnathos saltator (50%)	2	1529 bp	57.82	7.13	103.40
qh_10_scaffold_28849 Species: Halosimplex carlsbadense (50%)	2	1010 bp	69.70	6.83	103.37
qh_10_scaffold_16638 Species: halophilic archaeon DL31 (50%)	2	1582 bp	72.12	20.61	103.35
qh_10_scaffold_25261 Species: Plesiocystis pacifica (50%)	2	1130 bp	55.13	8.94	103.27
qh_10_scaffold_29791 Species: Salinibacter ruber (100%)	2	1418 bp	67.70	13.96	103.24
qh_10_scaffold_37922 Species: Natrinema altunense (50%)	2	1421 bp	69.81	11.19	103.24
qh_10_scaffold_28050 Species: Salinibacter ruber (50%)	2	1035 bp	62.51	9.95	103.19
qh_10_scaffold_35761 Order: Halobacteriales (75%)	4	1326 bp	63.73	11.01	103.17
qh_10_scaffold_20245 Species: RLO_Rokubacteria_71_22 (50%)	2	1358 bp	55.45	4.71	103.17
qh_10_scaffold_38537 Species: Sorangium cellulosum (50%)	2	1268 bp	70.82	11.04	103.16
qh_10_scaffold_41650 Species: Haloferax denitrificans (50%)	2	1056 bp	73.39	28.22	103.13
qh_10_scaffold_19296 Phylum: Cyanobacteria (66.67%)	3	1411 bp	65.70	6.52	103.12
qh_10_scaffold_23816	3	1188 bp	63.38	5.72	103.03
qh_10_scaffold_24010 Species: Rubrobacter xylanophilus (50%)	2	1666 bp	63.93	10.92	103.00
qh_10_scaffold_33606 Species: Natronorubrum tibetense (50%)	2	1334 bp	67.92	27.96	103.00
qh_10_scaffold_42733 Species: Toxoplasma gondii (50%)	2	1235 bp	55.55	8.58	103.00
qh_10_scaffold_41204 Species: Anaerophaga thermohalophila (50%)	2	1221 bp	62.74	8.52	102.95
qh_10_scaffold_33983 Species: Halorubrum coriense (50%)	2	1379 bp	74.84	18.64	102.90

Displaying items 51-100 of 23910 in total

QH_10_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

QH_10_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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