ggKbase | organisms

Advanced Search

QH_10_UNK

In projects: QH_10

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 20.81 Longest contig: 99.48 Kbp Bin length: 62.59 Mbp GC content: 61.29 %

Contigs count: 23910 Features count: 79125 rRNAs count: 20 tRNAs count: 0

Genome completeness

megabin RP 54 / 55 MC: 52 BSCG 49 / 51 MC: 47 ASCG 38 / 38 MC: 38

Displaying items 23901-23910 of 23910 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
qh_10_scaffold_22057 Species: Natrialba taiwanensis (50%)	2	1269 bp	62.10	13.08	110.64
qh_10_scaffold_19906 Class: Halobacteria (66.67%)	3	1376 bp	65.04	42.44	111.19
qh_10_scaffold_20009 Species: uncultured bacterium (50%)	2	1371 bp	54.56	8.46	111.82
qh_10_scaffold_23573 Species: Cladophialophora carrionii (50%)	2	1200 bp	54.17	5.92	112.25
qh_10_scaffold_43988 Species: Salinibacter ruber (50%)	2	1296 bp	65.90	7.41	112.50
qh_10_scaffold_33775 Species: Halosimplex carlsbadense (100%)	3	1375 bp	74.40	23.93	114.33
qh_10_scaffold_48936 Species: Natronomonas pharaonis (100%)	2	1001 bp	70.73	43.46	115.98
qh_10_scaffold_24489 Species: Halogeometricum borinquense (50%)	2	1160 bp	69.05	27.76	116.64
qh_10_scaffold_27597	3	1049 bp	65.49	8.48	117.83
qh_10_scaffold_27752	3	1044 bp	63.70	8.43	120.12

Displaying items 23901-23910 of 23910 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

ggKBase is a service designed to assist in analyzing and integrating *omic data (e.g. metagenomics, proteomics, etc). The source code for ggKBase will be made available as an open source project.
You are encouraged to contact the development staff with issues related to usage of ggKBase. The ggKBase development staff as well as the members of the Banfield lab at the University of California, Berkeley, are not available to support outside research/computation requests.
We aim to make ggKBase the best resource possible and to make it accurate and available at all times; however, we cannot guarantee the correctness of any results, validity or integrity of the data, or the availability of the service: We cannot be held responsible for decisions made, losses suffered, or damages that resulted from using data from ggKBase.
We respect our user’s privacy and will not share any user registration details with anyone other than the ggKBase developers.
ggKBase is a social web site – it has mechanisms to share results and comments with other users of the system. As a registered user of ggKBase, you agree to respect the rights of other users and conduct yourself in a professional manner with courtesy and collegiality towards your fellow users. We reserve the right to delete users found not upholding these standards.
We reserve the right to reject inappropriate data submissions. As a User, you agree not to submit data that is not your own and you agree that any data you do submit is being submitted specifically for the purposes of analyzing using ggKBase.
ggKBase and its underlying servers and systems are properly administrated and backed up. However, ggKBase is not responsible for data loss or work loss as a result of system or hardware failures or criminal activity.
We reserve the right to perform additional data analysis to improve ggKBase, and we will not release user-contributed data without consent of the user.
Users of ggKBase are expected to properly cite any published work.
We reserve the right at any time to modify the Terms of Service for ggKBase. Modifications to these Terms will be effective immediately and we will make a reasonable effort to contact users via email of any changes. If you continue using ggKBase after an amendment to the Terms of Service, we assume you have read and accepted the changes.