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QH_10_UNK

In projects: QH_10

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 20.81 Longest contig: 99.48 Kbp Bin length: 62.59 Mbp GC content: 61.29 %
Contigs count: 23910 Features count: 79125 rRNAs count: 20 tRNAs count: 0

Genome completeness

megabin RP 54 / 55 MC: 52 BSCG 49 / 51 MC: 47 ASCG 38 / 38 MC: 38
Displaying items 21451-21500 of 23910 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_10_scaffold_24125
Species: Salinibacter ruber (100%)
2 1175 bp 61.11 42.30 81.96
qh_10_scaffold_27695
Species: Salinibacter ruber (100%)
1 1045 bp 64.69 42.30 99.62
qh_10_scaffold_13643
Species: Halorubrum lacusprofundi (100%)
2 1827 bp 59.11 42.31 76.68
qh_10_scaffold_15592
Species: Natronomonas pharaonis (66.67%)
3 1663 bp 74.02 42.33 88.21
qh_10_scaffold_6547
Class: Halobacteria (100%)
3 2967 bp 67.37 42.33 87.26
qh_10_scaffold_10170
Order: Halobacteriales (50%)
4 2242 bp 69.76 42.33 85.77
qh_10_scaffold_11184 2 2799 bp 58.34 42.33 60.66
qh_10_scaffold_13914 1 1800 bp 55.44 42.33 19.67
qh_10_scaffold_10435
Class: Halobacteria (75%)
4 2957 bp 70.71 42.34 90.40
qh_10_scaffold_7224
Domain: Bacteria (66.67%)
3 2796 bp 56.37 42.35 98.28
qh_10_scaffold_19124
Species: Salinibacter ruber (50%)
2 1421 bp 57.64 42.36 110.20
qh_10_scaffold_659 52 44433 bp 41.30 42.36 86.15
qh_10_scaffold_19884
Order: Halobacteriales (75%)
4 2363 bp 67.71 42.36 85.32
qh_10_scaffold_22287
Species: halophilic archaeon J07HX64 (50%)
2 1258 bp 64.86 42.37 99.92
qh_10_scaffold_9386
Class: Halobacteria (75%)
4 3021 bp 57.70 42.37 78.75
qh_10_scaffold_19176
Genus: Haloarcula (66.67%)
3 2065 bp 71.91 42.37 93.27
qh_10_scaffold_15513
Species: Natronomonas pharaonis (66.67%)
3 2129 bp 73.84 42.37 83.84
qh_10_scaffold_13945
Species: Natronomonas pharaonis (50%)
2 1798 bp 57.79 42.38 74.92
qh_10_scaffold_9343
Species: Natronomonas moolapensis (50%)
4 2378 bp 74.10 42.39 86.04
qh_10_scaffold_5519
Species: Salinibacter ruber (100%)
3 3274 bp 63.35 42.39 81.37
qh_10_scaffold_579
Species: Salinibacter ruber (55.56%)
9 9322 bp 62.27 42.39 78.78
qh_10_scaffold_22456
Species: Candidatus Halobonum tyrrellensis (100%)
2 1250 bp 57.52 42.40 99.84
qh_10_scaffold_29520
Class: Halobacteria (66.67%)
3 1416 bp 62.99 42.40 75.64
qh_10_scaffold_8404
Order: Halobacteriales (60%)
5 3872 bp 57.64 42.41 76.47
qh_10_scaffold_36780
Species: Natronomonas pharaonis (100%)
2 1325 bp 66.34 42.42 78.79
qh_10_scaffold_19906
Class: Halobacteria (66.67%)
3 1376 bp 65.04 42.44 111.19
qh_10_scaffold_12271
Species: marine sediment metagenome (50%)
2 1970 bp 57.87 42.44 81.32
qh_10_scaffold_21576
Species: Monomastix sp. OKE-1 (100%)
1 1291 bp 43.07 42.45 24.86
qh_10_scaffold_25923
Class: Halobacteria (50%)
4 2386 bp 65.59 42.46 71.29
qh_10_scaffold_24469 3 1161 bp 57.80 42.46 48.32
qh_10_scaffold_2930
Order: Halobacteriales (80%)
5 4558 bp 64.35 42.47 80.36
qh_10_scaffold_19459
Species: Halorhabdus tiamatea (50%)
2 1401 bp 65.74 42.47 91.22
qh_10_scaffold_667
Species: Salinibacter ruber (55.56%)
9 13901 bp 61.53 42.48 68.76
qh_10_scaffold_9491
Species: Halorubrum tebenquichense (100%)
1 2354 bp 56.37 42.48 74.43
qh_10_scaffold_8534
Order: Natrialbales (50%)
6 4417 bp 68.33 42.49 89.38
qh_10_scaffold_5207
Domain: Bacteria (100%)
3 3386 bp 66.01 42.50 77.44
qh_10_scaffold_12544
Species: Haloarcula japonica (50%)
2 1941 bp 67.65 42.50 92.43
qh_10_scaffold_19483
Species: Halosimplex carlsbadense (100%)
1 1400 bp 71.86 42.50 89.57
qh_10_scaffold_604
Phylum: Bacteroidetes (50%)
10 10656 bp 66.16 42.52 87.50
qh_10_scaffold_36106
Species: halophilic archaeon J07HX64 (50%)
2 1303 bp 63.85 42.52 72.06
qh_10_scaffold_28710
Species: Natronomonas moolapensis (75%)
4 1869 bp 67.04 42.54 80.42
qh_10_scaffold_10927
Species: Halosimplex carlsbadense (66.67%)
3 2137 bp 71.36 42.54 96.44
qh_10_scaffold_19550
Order: Halobacteriales (60%)
5 2968 bp 63.51 42.55 84.30
qh_10_scaffold_14445
Species: halophilic archaeon J07HX64 (50%)
2 1753 bp 72.90 42.56 91.39
qh_10_scaffold_15060
Genus: Natronomonas (66.67%)
3 1706 bp 68.35 42.56 84.58
qh_10_scaffold_24081
Species: Natronomonas pharaonis (50%)
2 1177 bp 66.78 42.57 95.58
qh_10_scaffold_26986
Class: Halobacteria (66.67%)
3 2231 bp 65.31 42.58 77.99
qh_10_scaffold_20204
Species: Halosimplex carlsbadense (75%)
4 2102 bp 67.13 42.58 62.37
qh_10_scaffold_15017
Species: Natronomonas pharaonis (50%)
6 2397 bp 67.71 42.59 84.48
qh_10_scaffold_13896
Order: Halobacteriales (66.67%)
3 1802 bp 60.04 42.59 77.08
Displaying items 21451-21500 of 23910 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.