ggKbase home page
Advanced Search
Search Help

QH_11_UNK

In projects: QH_11

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 22.64 Longest contig: 134.36 Kbp Bin length: 104.22 Mbp GC content: 62.13 %
Contigs count: 31177 Features count: 126136 rRNAs count: 22 tRNAs count: 1281

Genome completeness

megabin RP 54 / 55 MC: 54 BSCG 51 / 51 MC: 51 ASCG 38 / 38 MC: 38
Displaying items 451-500 of 31177 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_11_scaffold_28733
Domain: Bacteria (100%)
3 1945 bp 35.58 4.73 94.86
qh_11_scaffold_28059
Species: Haliscomenobacter hydrossis (50%)
2 1035 bp 61.26 4.73 57.10
qh_11_scaffold_36001
Phylum: Parcubacteria (60%)
5 2132 bp 29.74 4.74 91.60
qh_11_scaffold_22535
Species: halophilic archaeon J07HB67 (50%)
2 1245 bp 62.09 4.74 59.04
qh_11_scaffold_28761
Species: Candidatus Nanosalinarum sp. J07AB56 (100%)
1 1013 bp 50.15 4.74 99.80
qh_11_scaffold_22545
Species: Pseudomonas xanthomarina (50%)
2 1245 bp 57.51 4.74 62.89
qh_11_scaffold_33658
Species: GWF2_Bacteroidetes_38_335_curated (100%)
1 1473 bp 51.60 4.75 55.19
qh_11_scaffold_26827 2 1073 bp 49.77 4.75 100.09
qh_11_scaffold_12801 3 1915 bp 46.79 4.75 82.09
qh_11_scaffold_20451
Domain: Bacteria (100%)
3 1346 bp 60.48 4.75 82.24
qh_11_scaffold_20032
Species: Halorubrum aidingense (100%)
1 1368 bp 45.39 4.75 99.78
qh_11_scaffold_36561
Species: uncultured organism (50%)
2 1432 bp 53.35 4.75 59.92
qh_11_scaffold_27456
Species: marine sediment metagenome (100%)
1 1053 bp 45.39 4.75 99.72
qh_11_scaffold_28876
Species: Peregrinibacteria bacterium GW2011_GWC2_33_13 (50%)
2 1009 bp 40.83 4.76 96.93
qh_11_scaffold_28880
Species: R_Acidobacteria_61_28 (50%)
2 1009 bp 52.43 4.76 93.06
qh_11_scaffold_23587 3 1198 bp 38.06 4.76 82.89
qh_11_scaffold_22213
Species: RBG_19FT_COMBO_Nitrospirae_42_15_curated (50%)
2 1260 bp 31.75 4.76 95.24
qh_11_scaffold_17316
Species: Halorubrum lacusprofundi (50%)
2 1535 bp 53.55 4.76 100.26
qh_11_scaffold_25223
Class: Magasanikbacteria (66.67%)
3 1132 bp 33.04 4.77 90.11
qh_11_scaffold_15413
Species: Dyadobacter fermentans (50%)
2 1677 bp 53.31 4.77 43.65
qh_11_scaffold_45931
Species: Natrinema altunense (100%)
2 1174 bp 55.03 4.77 97.87
qh_11_scaffold_20544
Species: Salinibacter ruber (100%)
1 1342 bp 62.89 4.77 55.22
qh_11_scaffold_13705
Species: GWA2_OD1_56_11 (50%)
4 2720 bp 31.84 4.78 99.38
qh_11_scaffold_29012
Species: Beggiatoa sp. PS (50%)
2 1005 bp 50.65 4.78 100.30
qh_11_scaffold_22353
Species: Natrinema pellirubrum (100%)
1 1254 bp 43.78 4.78 99.76
qh_11_scaffold_26972
Species: Haloarcula argentinensis (50%)
2 1068 bp 50.75 4.78 85.67
qh_11_scaffold_27755
Species: RIFOXYD1_FULL_OD1_Magasanikbacteria_40_23_curated (50%)
2 1044 bp 33.14 4.79 100.57
qh_11_scaffold_27082
Species: Caldanaerobacter subterraneus (100%)
1 1065 bp 37.65 4.79 91.55
qh_11_scaffold_20664
Species: Trabulsiella guamensis (50%)
2 1336 bp 62.35 4.79 96.33
qh_11_scaffold_18827
Species: R_RIF_OD1_11_46_22 (50%)
2 1441 bp 51.91 4.79 74.74
qh_11_scaffold_26480
Species: uncultured archaeon A07HR60 (50%)
2 1085 bp 44.52 4.79 100.09
qh_11_scaffold_23816
Species: Nitrosococcus oceani (50%)
2 1187 bp 46.42 4.80 89.22
qh_11_scaffold_24313
Species: R_Gammaproteobacteria_38_14 (50%)
2 1167 bp 66.32 4.80 52.19
qh_11_scaffold_40613
Species: Rhodothermus marinus (50%)
2 1684 bp 53.21 4.81 39.55
qh_11_scaffold_25479
Species: Coraliomargarita akajimensis (100%)
1 1122 bp 60.25 4.81 82.09
qh_11_scaffold_18579
Species: Natronorubrum bangense (50%)
2 1455 bp 49.76 4.81 99.38
qh_11_scaffold_23892
Species: GWF2_OD1_RAAC4-rel_30_133 (100%)
1 1184 bp 45.78 4.81 65.12
qh_11_scaffold_27883
Species: Salisaeta longa (50%)
2 1040 bp 54.62 4.81 55.96
qh_11_scaffold_27229
Species: Halorhabdus utahensis (50%)
2 1060 bp 37.17 4.81 71.32
qh_11_scaffold_28634 1 1017 bp 44.35 4.82 31.56
qh_11_scaffold_17608
Species: R_OD1_Magasanikbacteria_33_17 (50%)
2 1515 bp 35.84 4.82 97.03
qh_11_scaffold_30036
Species: R_OD1_Magasanikbacteria_51_14 (100%)
1 1536 bp 32.16 4.82 99.80
qh_11_scaffold_18617
Species: Salinibacter ruber (100%)
1 1453 bp 59.94 4.82 86.10
qh_11_scaffold_42949 1 1516 bp 31.20 4.82 30.28
qh_11_scaffold_39096
Species: Alicyclobacillus acidocaldarius (50%)
2 1576 bp 47.40 4.82 66.62
qh_11_scaffold_16166
Species: Salinibacter ruber (50%)
2 2656 bp 53.69 4.82 76.24
qh_11_scaffold_19162
Species: RBG_16_RIF03_38_10_curated (50%)
2 2011 bp 47.99 4.82 93.09
qh_11_scaffold_24472
Species: marine sediment metagenome (100%)
1 1161 bp 57.19 4.82 85.01
qh_11_scaffold_19297
Species: Halorubrum sp. AJ67 (100%)
1 1409 bp 53.37 4.83 99.86
qh_11_scaffold_25559 1 1119 bp 44.50 4.83 99.73
Displaying items 451-500 of 31177 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.