ggKbase home page
Advanced Search
Search Help

QS_1_UNK

In projects: QS_1  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 21.56 Longest contig: 171.49 Kbp Bin length: 82.52 Mbp GC content: 62.60 %
Contigs count: 28378 Features count: 107284 rRNAs count: 14 tRNAs count: 997

Genome completeness

megabin RP 48 / 55 MC: 44 BSCG 43 / 51 MC: 36 ASCG 38 / 38 MC: 38
Displaying items 351-400 of 28378 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qs_1_scaffold_28991
Species: Halosimplex carlsbadense (50%)
2 1097 bp 66.55 7.66 100.64
qs_1_scaffold_24769
Species: halophilic archaeon J07HB67 (100%)
2 1255 bp 69.48 40.32 100.64
qs_1_scaffold_6137
Order: Bacteroidales (50%)
4 3610 bp 59.72 13.57 100.64
qs_1_scaffold_16781
Species: Natronomonas moolapensis (100%)
2 1729 bp 77.67 17.76 100.64
qs_1_scaffold_18685 4 1586 bp 66.39 11.41 100.63
qs_1_scaffold_18644
Species: Haloarcula amylolytica (50%)
4 1589 bp 56.70 5.66 100.63
qs_1_scaffold_7865
Genus: Haloferax (50%)
4 3035 bp 64.74 6.82 100.63
qs_1_scaffold_38527
Species: Halococcus saccharolyticus (100%)
2 1440 bp 68.96 79.51 100.63
qs_1_scaffold_10904
Genus: Natronomonas (71.43%)
7 2409 bp 67.16 24.95 100.62
qs_1_scaffold_28098
Species: Halococcus salifodinae (100%)
2 1127 bp 70.36 130.43 100.62
qs_1_scaffold_27923
Species: Halogranum salarium (50%)
2 1133 bp 68.93 8.56 100.62
qs_1_scaffold_23668
Species: Natronorubrum bangense (50%)
2 1303 bp 56.79 4.99 100.61
qs_1_scaffold_15360
Species: Desulfococcus oleovorans (50%)
2 3587 bp 62.59 13.60 100.61
qs_1_scaffold_23520
Species: Halococcus saccharolyticus (50%)
2 1309 bp 65.93 11.08 100.61
qs_1_scaffold_27470
Species: Natronorubrum bangense (50%)
2 1148 bp 73.52 21.95 100.61
qs_1_scaffold_11562
Order: Halobacteriales (66.67%)
3 2302 bp 51.00 13.21 100.61
qs_1_scaffold_27237
Species: Halococcus saccharolyticus (50%)
2 1157 bp 72.69 139.24 100.61
qs_1_scaffold_23195
Species: Halosimplex carlsbadense (50%)
2 1324 bp 64.35 6.65 100.60
qs_1_scaffold_27046 3 1163 bp 66.55 7.91 100.60
qs_1_scaffold_26954
Species: Natrialba taiwanensis (50%)
2 1166 bp 75.21 8.15 100.60
qs_1_scaffold_19891
Species: Halococcus morrhuae (66.67%)
3 1506 bp 66.40 24.17 100.60
qs_1_scaffold_31986
Order: Natrialbales (66.67%)
3 1008 bp 70.73 8.13 100.59
qs_1_scaffold_36550
Class: Halobacteria (66.67%)
3 1518 bp 73.78 11.73 100.59
qs_1_scaffold_26607
Species: Haloferax elongans (100%)
2 1181 bp 46.66 5.17 100.59
qs_1_scaffold_13698
Species: Natronomonas moolapensis (50%)
4 2028 bp 68.69 54.78 100.59
qs_1_scaffold_32442
Order: Natrialbales (66.67%)
3 2538 bp 67.18 10.36 100.59
qs_1_scaffold_19504
Class: Halobacteria (66.67%)
3 1530 bp 63.07 11.44 100.59
qs_1_scaffold_33540 3 2899 bp 46.08 6.93 100.59
qs_1_scaffold_26177
Species: Haladaptatus paucihalophilus (50%)
2 1199 bp 67.97 11.34 100.58
qs_1_scaffold_30902
Species: Natronomonas pharaonis (100%)
2 1038 bp 65.80 47.30 100.58
qs_1_scaffold_40576
Species: Halorubrum tebenquichense (50%)
2 1390 bp 66.26 19.78 100.58
qs_1_scaffold_31717
Species: Halococcus salifodinae (50%)
4 2613 bp 66.09 51.59 100.57
qs_1_scaffold_18938 3 1569 bp 57.04 13.38 100.57
qs_1_scaffold_25552
Species: Haloterrigena turkmenica (100%)
2 1223 bp 70.07 11.20 100.57
qs_1_scaffold_30466
Species: Halorhabdus tiamatea (50%)
2 1050 bp 61.05 6.57 100.57
qs_1_scaffold_30485
Species: Haloferax sp. Arc-Hr (50%)
2 1050 bp 74.38 9.33 100.57
qs_1_scaffold_10547
Species: Pedosphaera parvula (50%)
2 2470 bp 61.54 19.80 100.57
qs_1_scaffold_18319 5 1611 bp 65.11 6.39 100.56
qs_1_scaffold_21129
Order: Halobacteriales (66.67%)
3 1432 bp 66.41 7.82 100.56
qs_1_scaffold_20963
Species: Halosimplex carlsbadense (50%)
2 1441 bp 67.80 14.09 100.55
qs_1_scaffold_15613
Species: sediment metagenome (66.67%)
3 1829 bp 63.42 22.80 100.55
qs_1_scaffold_9962
Species: Halorhabdus tiamatea (50%)
4 2572 bp 56.92 8.75 100.54
qs_1_scaffold_27852
Species: Rhodothermus marinus (50%)
2 2205 bp 71.11 8.89 100.54
qs_1_scaffold_20459
Order: Halobacteriales (100%)
3 1471 bp 69.82 30.52 100.54
qs_1_scaffold_13548
Order: Halobacteriales (80%)
5 2047 bp 71.18 14.12 100.54
qs_1_scaffold_20122
Species: Halostagnicola larsenii (50%)
2 1492 bp 69.71 14.01 100.54
qs_1_scaffold_23569 3 1307 bp 66.34 16.14 100.54
qs_1_scaffold_23399
Species: halophilic archaeon DL31 (50%)
2 1316 bp 55.93 6.08 100.53
qs_1_scaffold_27898
Species: halophilic archaeon DL31 (50%)
2 1134 bp 70.90 6.08 100.53
qs_1_scaffold_23071 3 1331 bp 62.73 14.43 100.53
Displaying items 351-400 of 28378 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.