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QS_1_UNK

In projects: QS_1  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 21.56 Longest contig: 171.49 Kbp Bin length: 82.52 Mbp GC content: 62.60 %
Contigs count: 28378 Features count: 107284 rRNAs count: 14 tRNAs count: 997

Genome completeness

megabin RP 48 / 55 MC: 44 BSCG 43 / 51 MC: 36 ASCG 38 / 38 MC: 38
Displaying items 301-350 of 28378 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qs_1_scaffold_28467 2 1115 bp 57.22 44.22 26.91
qs_1_scaffold_26157 3 1781 bp 53.45 11.45 26.95
qs_1_scaffold_23278 2 1321 bp 60.94 7.57 27.03
qs_1_scaffold_30407 1 1053 bp 42.36 6.08 27.07
qs_1_scaffold_37505
Species: Haloferax larsenii (100%)
1 1271 bp 62.00 23.60 27.14
qs_1_scaffold_20159
Species: Rhodothermus marinus (50%)
2 1489 bp 66.22 6.51 27.20
qs_1_scaffold_16511
Species: Natrinema sp. J7-2 (66.67%)
3 3600 bp 58.72 15.36 27.25
qs_1_scaffold_20061 2 1496 bp 59.63 60.43 27.27
qs_1_scaffold_31119
Species: Haloterrigena limicola (50%)
2 1031 bp 55.29 7.08 27.35
qs_1_scaffold_38916 2 1365 bp 61.25 41.47 27.47
qs_1_scaffold_25547
Species: Halovivax asiaticus (50%)
2 1223 bp 55.85 10.38 27.47
qs_1_scaffold_20555
Species: Salinibacter ruber (75%)
4 3476 bp 59.18 59.46 27.53
qs_1_scaffold_29930 1 1067 bp 53.33 25.49 27.55
qs_1_scaffold_49398
Species: Haloterrigena salina (50%)
2 1327 bp 52.37 8.89 27.58
qs_1_scaffold_19977 2 1501 bp 47.17 4.93 27.58
qs_1_scaffold_30674 1 1044 bp 53.35 11.40 27.59
qs_1_scaffold_40443
Species: Haloferax mucosum (100%)
1 1508 bp 41.98 4.51 27.65
qs_1_scaffold_27543 1 1146 bp 57.68 5.85 27.75
qs_1_scaffold_11088 2 2378 bp 43.23 5.00 27.75
qs_1_scaffold_27920 1 1133 bp 51.72 9.36 27.80
qs_1_scaffold_24607 1 1262 bp 68.38 9.11 27.81
qs_1_scaffold_15819 3 1811 bp 49.09 16.95 27.83
qs_1_scaffold_6698 4 3399 bp 56.46 24.42 27.89
qs_1_scaffold_19963
Species: Halococcus thailandensis (100%)
1 1502 bp 54.39 10.05 27.96
qs_1_scaffold_31501 3 1021 bp 59.75 12.14 28.01
qs_1_scaffold_31274 1 1027 bp 55.50 9.35 28.04
qs_1_scaffold_21812
Species: Halococcus saccharolyticus (50%)
2 1397 bp 58.48 25.34 28.13
qs_1_scaffold_27132 1 1160 bp 48.45 4.48 28.19
qs_1_scaffold_6280 4 3554 bp 44.15 7.71 28.19
qs_1_scaffold_29756 2 1073 bp 59.27 12.67 28.24
qs_1_scaffold_38347 1 1401 bp 61.74 8.49 28.27
qs_1_scaffold_13704
Species: uncultured_archaeon_J07HX5 (50%)
2 2027 bp 59.89 28.32 28.27
qs_1_scaffold_21335
Species: Candidatus Halobonum tyrrellensis (50%)
2 1420 bp 61.27 13.66 28.31
qs_1_scaffold_25688
Species: Salinibacter ruber (50%)
2 1218 bp 54.27 35.96 28.33
qs_1_scaffold_28572
Species: Halococcus morrhuae (50%)
2 1111 bp 51.49 22.59 28.35
qs_1_scaffold_19824
Species: Halococcus salifodinae (50%)
2 1511 bp 50.76 28.72 28.39
qs_1_scaffold_46567 2 1519 bp 54.05 65.04 28.44
qs_1_scaffold_26210 2 1822 bp 59.50 32.47 28.49
qs_1_scaffold_29059 2 1094 bp 43.24 6.76 28.52
qs_1_scaffold_10917 2 2407 bp 43.79 6.77 28.54
qs_1_scaffold_27570
Species: halophilic archaeon DL31 (50%)
2 1145 bp 60.96 24.10 28.56
qs_1_scaffold_28601
Species: uncultured archaeon A07HN63 (100%)
1 1110 bp 53.78 12.97 28.65
qs_1_scaffold_27124 1 1160 bp 58.97 36.29 28.71
qs_1_scaffold_32261
Species: Natronomonas moolapensis (50%)
2 1800 bp 65.39 23.89 28.78
qs_1_scaffold_15148
Species: Gloeobacter violaceus (50%)
2 1876 bp 49.04 33.64 28.78
qs_1_scaffold_24429
Species: Halogranum salarium (50%)
2 1269 bp 69.66 9.69 28.84
qs_1_scaffold_19537
Species: Haloferax prahovense (100%)
1 1528 bp 53.73 7.46 28.86
qs_1_scaffold_40233
Species: Flammeovirgaceae bacterium 311 (100%)
1 1403 bp 45.55 5.06 28.87
qs_1_scaffold_32172 4 1003 bp 62.21 7.18 28.91
qs_1_scaffold_9458 3 2664 bp 50.94 13.66 28.94
Displaying items 301-350 of 28378 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.