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QS_2_UNK

In projects: QS_2  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 27.84 Longest contig: 286.04 Kbp Bin length: 41.26 Mbp GC content: 59.97 %
Contigs count: 14256 Features count: 54073 rRNAs count: 12 tRNAs count: 473

Genome completeness

megabin RP 47 / 55 MC: 37 BSCG 45 / 51 MC: 38 ASCG 38 / 38 MC: 38
Displaying items 13801-13850 of 14256 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qs_2_scaffold_9113
Species: Haloarcula japonica (50%)
2 1751 bp 60.19 22.22 39.06
qs_2_scaffold_7691 2 2014 bp 54.77 7.20 39.03
qs_2_scaffold_10763
Species: Natronomonas moolapensis (50%)
2 2307 bp 55.35 5.85 39.01
qs_2_scaffold_6149 4 2379 bp 52.00 11.60 38.97
qs_2_scaffold_25467
Species: Haloarcula hispanica (50%)
2 1464 bp 62.09 6.69 38.93
qs_2_scaffold_13597
Species: Halococcus salifodinae (50%)
2 1256 bp 62.50 23.49 38.93
qs_2_scaffold_20777 3 1395 bp 54.41 6.74 38.92
qs_2_scaffold_9382 2 1712 bp 55.78 6.60 38.90
qs_2_scaffold_29583
Species: Halococcus hamelinensis (100%)
1 1258 bp 60.41 24.56 38.87
qs_2_scaffold_14858 2 1159 bp 54.96 6.82 38.83
qs_2_scaffold_17378 3 1005 bp 49.55 13.53 38.81
qs_2_scaffold_9293
Class: Halobacteria (66.67%)
3 1726 bp 55.68 9.15 38.76
qs_2_scaffold_13870
Species: Halonotius sp. J07HN6 (100%)
1 1231 bp 58.98 19.42 38.75
qs_2_scaffold_9931 4 2411 bp 55.79 28.87 38.70
qs_2_scaffold_9600
Class: Halobacteria (66.67%)
3 2854 bp 58.62 8.72 38.68
qs_2_scaffold_7898 2 1970 bp 53.40 6.75 38.68
qs_2_scaffold_27809 2 1024 bp 67.29 6.54 38.67
qs_2_scaffold_20484
Species: Natronobacterium gregoryi (50%)
2 1964 bp 68.53 98.78 38.65
qs_2_scaffold_7334
Order: Natrialbales (66.67%)
3 2090 bp 58.61 12.30 38.61
qs_2_scaffold_12987
Genus: Natronomonas (66.67%)
3 1307 bp 67.25 11.40 38.56
qs_2_scaffold_12390 1 1362 bp 45.45 4.26 38.55
qs_2_scaffold_1279 9 6780 bp 49.41 8.51 38.54
qs_2_scaffold_5913 3 3511 bp 53.92 35.66 38.54
qs_2_scaffold_8500 3 1853 bp 54.02 5.77 38.53
qs_2_scaffold_11654
Species: Halomicrobium mukohataei (50%)
2 1808 bp 63.94 112.39 38.50
qs_2_scaffold_15626
Species: Natronorubrum tibetense (50%)
2 1107 bp 66.03 39.02 38.48
qs_2_scaffold_12203
Species: Natrialba hulunbeirensis (50%)
2 1380 bp 60.14 34.71 38.48
qs_2_scaffold_10793
Species: Haloferax prahovense (50%)
2 2343 bp 53.73 6.10 38.41
qs_2_scaffold_14989 4 2219 bp 51.64 5.54 38.40
qs_2_scaffold_14481 2 1185 bp 56.62 6.24 38.23
qs_2_scaffold_19372
Species: RBG_16_Actinobacteria_70_17_curated (50%)
2 2530 bp 55.10 5.02 38.18
qs_2_scaffold_20196
Species: Halococcus saccharolyticus (50%)
2 1391 bp 62.33 14.74 38.17
qs_2_scaffold_19511
Species: Natrinema versiforme (50%)
2 1321 bp 60.56 204.09 38.15
qs_2_scaffold_31708
Species: Tolypothrix campylonemoides (50%)
2 1141 bp 59.60 27.96 38.12
qs_2_scaffold_14424 2 1189 bp 61.73 12.28 38.10
qs_2_scaffold_14990 2 1150 bp 66.96 32.00 38.09
qs_2_scaffold_3702 3 3413 bp 53.24 6.01 38.06
qs_2_scaffold_9618 5 2712 bp 55.01 7.04 38.05
qs_2_scaffold_14744
Species: Halobacterium salinarum (50%)
2 1167 bp 60.50 57.58 38.05
qs_2_scaffold_13731 2 1246 bp 42.86 11.48 38.04
qs_2_scaffold_7028
Species: Halalkalicoccus jeotgali (50%)
2 2161 bp 54.37 65.43 38.04
qs_2_scaffold_21176
Species: Halomicrobium mukohataei (50%)
2 1422 bp 53.66 4.92 37.97
qs_2_scaffold_5738 4 3632 bp 51.43 5.73 37.91
qs_2_scaffold_9565 2 1686 bp 47.98 12.28 37.90
qs_2_scaffold_16110 2 1077 bp 51.81 7.24 37.88
qs_2_scaffold_13645 2 1252 bp 58.55 6.79 37.86
qs_2_scaffold_11702
Species: Halococcus saccharolyticus (50%)
2 1429 bp 58.01 8.19 37.79
qs_2_scaffold_13798
Species: Salinibacter ruber (100%)
2 1239 bp 66.51 11.06 37.77
qs_2_scaffold_7543
Species: Natronococcus occultus (100%)
1 2043 bp 52.28 5.53 37.74
qs_2_scaffold_9237
Species: Natronomonas pharaonis (50%)
2 1734 bp 59.11 16.09 37.72
Displaying items 13801-13850 of 14256 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.