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QS_4_UNK

In projects: QS_4  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 36.18 Longest contig: 272.33 Kbp Bin length: 77.60 Mbp GC content: 61.24 %
Contigs count: 24168 Features count: 98476 rRNAs count: 14 tRNAs count: 809

Genome completeness

megabin RP 49 / 55 MC: 43 BSCG 47 / 51 MC: 44 ASCG 38 / 38 MC: 38
Displaying items 901-950 of 24168 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qs_4_scaffold_1396
Class: Halobacteria (72.73%)
11 10521 bp 65.78 12.61 93.95
qs_4_scaffold_5776 11 3094 bp 51.91 6.92 83.78
qs_4_scaffold_2525 11 6095 bp 53.96 19.85 69.94
qs_4_scaffold_1880 11 8053 bp 51.73 15.39 57.33
qs_4_scaffold_2387 11 9841 bp 52.42 67.64 82.46
qs_4_scaffold_1765 11 10141 bp 64.30 52.68 88.42
qs_4_scaffold_2364
Domain: Bacteria (90.91%)
11 7211 bp 67.98 15.98 79.92
qs_4_scaffold_1742
Class: Halobacteria (72.73%)
11 11174 bp 51.96 35.66 84.44
qs_4_scaffold_1535 11 9723 bp 63.68 9.58 86.76
qs_4_scaffold_1996 11 7538 bp 51.71 12.07 81.55
qs_4_scaffold_2019
Class: Halobacteria (54.55%)
11 10226 bp 64.91 12.59 93.61
qs_4_scaffold_1374
Species: Halococcus saccharolyticus (81.82%)
11 10622 bp 58.55 45.53 89.59
qs_4_scaffold_3873
Order: Halobacteriales (72.73%)
11 7328 bp 66.06 10.04 88.59
qs_4_scaffold_1559 11 9600 bp 57.22 13.11 84.56
qs_4_scaffold_2158
Class: Halobacteria (90.91%)
11 11638 bp 63.88 102.46 83.67
qs_4_scaffold_2112
Class: Halobacteria (72.73%)
11 7167 bp 61.73 26.02 84.43
qs_4_scaffold_9942 11 9459 bp 61.56 180.89 70.69
qs_4_scaffold_1375
Class: Halobacteria (90.91%)
11 10620 bp 63.63 16.54 81.70
qs_4_scaffold_1329
Class: Halobacteria (72.73%)
11 11068 bp 64.55 12.26 90.29
qs_4_scaffold_2389
Class: Halobacteria (81.82%)
11 6404 bp 55.22 9.54 58.45
qs_4_scaffold_6262 11 2915 bp 52.11 6.69 85.83
qs_4_scaffold_4057
Class: Halobacteria (63.64%)
11 5894 bp 60.35 51.02 70.80
qs_4_scaffold_2715 11 5701 bp 62.46 13.35 86.62
qs_4_scaffold_2344 11 6512 bp 63.05 12.91 95.73
qs_4_scaffold_3412 11 4656 bp 51.89 6.83 94.07
qs_4_scaffold_1676
Domain: Archaea (63.64%)
11 8949 bp 61.94 10.40 79.85
qs_4_scaffold_4065
Phylum: Bacteroidetes (54.55%)
11 7815 bp 53.88 148.37 69.71
qs_4_scaffold_1538
Class: Halobacteria (90.91%)
11 9704 bp 58.27 55.66 72.62
qs_4_scaffold_2597
Class: Halobacteria (63.64%)
11 12089 bp 58.80 45.98 65.49
qs_4_scaffold_1976
Class: Halobacteria (90.91%)
11 7630 bp 66.38 9.53 84.46
qs_4_scaffold_1262 11 11664 bp 54.43 15.19 72.45
qs_4_scaffold_2299
Order: Halobacteriales (81.82%)
11 10225 bp 61.74 84.81 97.17
qs_4_scaffold_2276 11 6677 bp 54.01 13.81 87.21
qs_4_scaffold_2322
Domain: Archaea (54.55%)
11 6582 bp 50.84 8.54 81.08
qs_4_scaffold_2722 11 7330 bp 59.29 14.56 89.67
qs_4_scaffold_3728
Order: Halobacteriales (54.55%)
11 4315 bp 60.56 9.62 86.91
qs_4_scaffold_3417 11 4651 bp 65.38 21.67 95.33
qs_4_scaffold_2069
Class: Halobacteria (54.55%)
11 7304 bp 60.68 35.54 68.43
qs_4_scaffold_2115 11 7154 bp 57.25 12.45 59.84
qs_4_scaffold_1885 11 9615 bp 52.89 14.87 71.08
qs_4_scaffold_1908
Class: Halobacteria (63.64%)
11 7931 bp 56.79 19.75 88.74
qs_4_scaffold_4265
Class: Halobacteria (54.55%)
11 9107 bp 53.43 11.61 67.33
qs_4_scaffold_2726 11 5675 bp 65.55 11.63 85.48
qs_4_scaffold_3136
Species: Salinibacter ruber (81.82%)
11 10613 bp 65.17 109.82 82.74
qs_4_scaffold_3578
Class: Halobacteria (90.91%)
11 9160 bp 63.92 60.59 83.94
qs_4_scaffold_1540
Class: Halobacteria (63.64%)
11 9700 bp 54.71 17.43 87.37
qs_4_scaffold_3582 11 4470 bp 63.33 12.71 93.69
qs_4_scaffold_2024
Class: Halobacteria (90.91%)
11 8724 bp 65.43 9.30 81.81
qs_4_scaffold_2732
Class: Halobacteria (72.73%)
11 10068 bp 65.89 51.30 78.22
qs_4_scaffold_2439
Order: Haloferacales (54.55%)
11 7995 bp 59.51 47.30 72.95
Displaying items 901-950 of 24168 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.