ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 21.83 Longest contig: 259.33 Kbp Bin length: 60.91 Mbp GC content: 61.58 %

Contigs count: 20203 Features count: 77924 rRNAs count: 9 tRNAs count: 725

Genome completeness

megabin RP 50 / 55 MC: 45 BSCG 50 / 51 MC: 43 ASCG 38 / 38 MC: 38

Displaying items 19701-19750 of 20203 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
qs_7_scaffold_24004 Species: Halorubrum saccharovorum (50%)	2	1929 bp	66.67	11.20	100.16
qs_7_scaffold_17690 Species: Natronomonas pharaonis (50%)	2	1282 bp	73.48	43.53	100.16
qs_7_scaffold_5271 Species: halophilic archaeon J07HB67 (50%)	2	3199 bp	64.02	48.98	100.16
qs_7_scaffold_17767 Species: Natronomonas moolapensis (50%)	2	1276 bp	73.82	71.00	100.16
qs_7_scaffold_17946 Species: Salinibacter ruber (100%)	2	1264 bp	68.75	44.62	100.16
qs_7_scaffold_7616 Species: Halogranum salarium (50%)	2	2525 bp	65.86	7.92	100.16
qs_7_scaffold_17997	3	1261 bp	65.50	18.48	100.16
qs_7_scaffold_18066 Species: Halosimplex carlsbadense (100%)	2	1255 bp	60.64	5.74	100.16
qs_7_scaffold_26323 Species: Haloarcula californiae (50%)	2	1246 bp	77.13	46.31	100.16
qs_7_scaffold_18309 Species: Halococcus morrhuae (50%)	2	1240 bp	68.15	28.47	100.16
qs_7_scaffold_18343 Species: Haloarcula vallismortis (100%)	2	1237 bp	64.59	6.79	100.16
qs_7_scaffold_18456 Species: Natronomonas pharaonis (50%)	2	1231 bp	59.06	8.37	100.16
qs_7_scaffold_18462 Species: Halorubrum lipolyticum (50%)	2	1231 bp	52.72	6.90	100.16
qs_7_scaffold_5069 Species: Candidatus Halobonum tyrrellensis (66.67%)	3	4289 bp	71.93	19.17	100.16
qs_7_scaffold_7990 Genus: Natronomonas (50%)	4	2444 bp	68.29	24.22	100.16
qs_7_scaffold_18835 Species: Salinibacter ruber (100%)	2	1207 bp	67.36	41.59	100.17
qs_7_scaffold_16210 Species: Halococcus morrhuae (50%)	2	1800 bp	70.17	19.61	100.17
qs_7_scaffold_18989 Species: Haloarcula sp. CBA1115 (50%)	2	1198 bp	69.87	22.12	100.17
qs_7_scaffold_12063 Species: Natronomonas pharaonis (50%)	2	1794 bp	71.46	21.13	100.17
qs_7_scaffold_19039 Species: Natronomonas moolapensis (50%)	2	1195 bp	70.96	83.26	100.17
qs_7_scaffold_12182 Order: Halobacteriales (66.67%)	3	1779 bp	71.39	20.35	100.17
qs_7_scaffold_19237 Species: Halococcus salifodinae (50%)	2	1183 bp	70.92	5.83	100.17
qs_7_scaffold_19249 Species: Salinibacter ruber (50%)	2	1183 bp	71.01	27.90	100.17
qs_7_scaffold_11890 Species: Salisaeta longa (50%)	2	2348 bp	68.65	6.01	100.17
qs_7_scaffold_19585 Species: Halorubrum saccharovorum (100%)	2	1162 bp	73.41	10.59	100.17
qs_7_scaffold_12489 Species: Natronomonas moolapensis (100%)	2	1743 bp	69.65	76.19	100.17
qs_7_scaffold_19649 Species: Haladaptatus paucihalophilus (50%)	2	1159 bp	67.90	7.33	100.17
qs_7_scaffold_8719 Species: Haloferax sp. ATCC BAA-646 (100%)	2	2300 bp	49.74	7.48	100.17
qs_7_scaffold_19840 Species: Natronomonas pharaonis (100%)	2	1147 bp	71.67	21.53	100.17
qs_7_scaffold_19904 Species: Natronomonas pharaonis (100%)	2	1144 bp	69.84	15.30	100.18
qs_7_scaffold_20073 Species: Natronomonas pharaonis (100%)	2	1135 bp	67.05	10.40	100.18
qs_7_scaffold_20127 Species: Halococcus salifodinae (50%)	2	1132 bp	68.73	6.98	100.18
qs_7_scaffold_8939 Species: Halosimplex carlsbadense (50%)	2	2261 bp	64.44	14.73	100.18
qs_7_scaffold_20688 Species: Haloferax mediterranei (50%)	2	1102 bp	64.52	7.71	100.18
qs_7_scaffold_18301 Species: Salinibacter ruber (100%)	2	1653 bp	65.52	74.53	100.18
qs_7_scaffold_20987 Species: Natronomonas pharaonis (100%)	2	1087 bp	60.63	6.90	100.18
qs_7_scaffold_21041 Species: Halococcus morrhuae (50%)	2	1084 bp	69.65	83.21	100.18
qs_7_scaffold_13574 Species: Haloarcula marismortui (50%)	2	1623 bp	65.25	7.15	100.18
qs_7_scaffold_12900	3	3246 bp	66.17	8.72	100.18
qs_7_scaffold_21166 Species: Halopiger xanaduensis (50%)	2	1078 bp	63.82	6.77	100.19
qs_7_scaffold_13750 Order: Haloferacales (66.67%)	3	1605 bp	52.52	6.29	100.19
qs_7_scaffold_21361 Species: Haloferax mediterranei (50%)	2	1069 bp	66.70	34.52	100.19
qs_7_scaffold_21425 Species: Salinibacter ruber (66.67%)	3	1066 bp	57.50	12.20	100.19
qs_7_scaffold_21492 Species: Haloarcula amylolytica (50%)	2	1063 bp	70.56	6.49	100.19
qs_7_scaffold_13892 Species: Natronomonas moolapensis (100%)	2	1593 bp	69.68	18.08	100.19
qs_7_scaffold_21555 Species: Halogeometricum borinquense (50%)	2	1060 bp	66.89	6.04	100.19
qs_7_scaffold_21556 Species: Haloarcula amylolytica (100%)	2	1060 bp	61.32	28.96	100.19
qs_7_scaffold_21627 Species: marine sediment metagenome (50%)	2	1057 bp	42.01	6.62	100.19
qs_7_scaffold_21629 Species: Pontibacter sp. BAB1700 (50%)	2	1057 bp	65.85	11.54	100.19
qs_7_scaffold_39908 Species: Methylobacter tundripaludum (50%)	2	1051 bp	66.70	12.94	100.19

Displaying items 19701-19750 of 20203 in total

QS_7_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

QS_7_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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