ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 24.01 Longest contig: 255.34 Kbp Bin length: 53.74 Mbp GC content: 62.24 %

Contigs count: 17166 Features count: 68256 rRNAs count: 6 tRNAs count: 714

Genome completeness

megabin RP 51 / 55 MC: 48 BSCG 45 / 51 MC: 39 ASCG 38 / 38 MC: 38

Displaying items 351-400 of 17166 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
qs_9_scaffold_7886 Species: Halorubrum aidingense (66.67%)	3	2483 bp	70.00	22.67	100.28
qs_9_scaffold_19470 Species: Halococcus thailandensis (100%)	2	1068 bp	58.24	7.40	100.28
qs_9_scaffold_19475 Species: Natronomonas pharaonis (50%)	2	1068 bp	65.36	15.73	100.28
qs_9_scaffold_19369 Species: Halococcus salifodinae (50%)	2	1074 bp	68.25	8.94	100.28
qs_9_scaffold_28349 Species: Haladaptatus paucihalophilus (100%)	2	1086 bp	59.30	12.52	100.28
qs_9_scaffold_9211 Species: Candidatus Halobonum tyrrellensis (100%)	2	2172 bp	73.34	66.02	100.28
qs_9_scaffold_19105 Order: Haloferacales (66.67%)	3	1089 bp	64.37	14.05	100.28
qs_9_scaffold_19097 Species: Natronococcus jeotgali (50%)	2	1089 bp	69.33	8.82	100.28
qs_9_scaffold_18924 Species: Natronomonas pharaonis (50%)	2	1098 bp	68.31	26.05	100.27
qs_9_scaffold_11046 Species: uncultured archaeon A07HB70 (50%)	2	1840 bp	60.65	28.48	100.27
qs_9_scaffold_13775	3	1499 bp	61.97	6.20	100.27
qs_9_scaffold_18410 Species: Natronomonas pharaonis (100%)	2	1128 bp	69.06	32.80	100.27
qs_9_scaffold_18362 Species: Haloferax denitrificans (50%)	2	1131 bp	75.07	19.01	100.27
qs_9_scaffold_17980 Species: Natronomonas pharaonis (50%)	2	1155 bp	61.13	9.44	100.26
qs_9_scaffold_17881 Species: Natronomonas pharaonis (50%)	2	1161 bp	67.44	49.53	100.26
qs_9_scaffold_17423 Species: halophilic archaeon J07HB67 (50%)	2	1191 bp	67.00	148.45	100.25
qs_9_scaffold_17340 Species: Haloferax sulfurifontis (50%)	2	1197 bp	63.41	6.35	100.25
qs_9_scaffold_5768 Genus: Halococcus (100%)	3	3193 bp	63.39	70.25	100.25
qs_9_scaffold_17126 Species: Halorubrum sp. AJ67 (100%)	2	1212 bp	71.62	26.40	100.25
qs_9_scaffold_20688 Species: Haloferax prahovense (50%)	2	1625 bp	61.29	6.03	100.25
qs_9_scaffold_12601 Species: Halomicrobium mukohataei (75%)	4	1631 bp	64.38	10.97	100.25
qs_9_scaffold_16913 Species: Halosimplex carlsbadense (50%)	2	1227 bp	62.51	7.91	100.24
qs_9_scaffold_12551 Species: Natranaerobius thermophilus (50%)	2	1637 bp	58.46	5.50	100.24
qs_9_scaffold_9642 Class: Halobacteria (100%)	3	2080 bp	71.54	17.50	100.24
qs_9_scaffold_16552 Species: Natronomonas pharaonis (100%)	2	1254 bp	65.63	40.43	100.24
qs_9_scaffold_6364 Species: Salinarchaeum sp. Harcht-Bsk1 (50%)	4	2951 bp	69.91	138.16	100.24
qs_9_scaffold_14542 Species: Haloterrigena salina (66.67%)	3	2113 bp	50.17	6.01	100.24
qs_9_scaffold_16314 Species: Salinibacter ruber (50%)	2	1272 bp	67.77	12.11	100.24
qs_9_scaffold_24568 Species: Natronomonas moolapensis (50%)	2	1272 bp	70.68	39.94	100.24
qs_9_scaffold_16069 Species: Salinibacter ruber (50%)	2	1290 bp	68.37	45.19	100.23
qs_9_scaffold_15836 Species: Natronomonas moolapensis (50%)	4	1308 bp	67.20	59.71	100.23
qs_9_scaffold_7260 Species: Halogeometricum pallidum (50%)	2	2652 bp	70.14	38.54	100.23
qs_9_scaffold_11488 Species: Haloterrigena salina (50%)	2	1778 bp	48.76	5.62	100.23
qs_9_scaffold_15527 Species: Haloferax prahovense (50%)	2	1335 bp	73.41	54.23	100.23
qs_9_scaffold_9361 Species: Natronomonas pharaonis (75%)	4	3580 bp	67.63	50.70	100.22
qs_9_scaffold_5867 Phylum: Euryarchaeota (60%)	5	3146 bp	56.58	6.64	100.22
qs_9_scaffold_5045 Order: Halobacteriales (66.67%)	3	4628 bp	79.30	44.51	100.22
qs_9_scaffold_14836 Species: Natronomonas moolapensis (100%)	2	1392 bp	67.60	44.97	100.22
qs_9_scaffold_14711 Species: Natronomonas moolapensis (50%)	2	1404 bp	75.14	31.05	100.21
qs_9_scaffold_14585 Species: Candidatus Entotheonella sp. TSY2 (50%)	2	1416 bp	51.48	6.14	100.21
qs_9_scaffold_10765 Species: Halopiger xanaduensis (50%)	2	1889 bp	75.70	8.21	100.21
qs_9_scaffold_10462 Species: Halococcus thailandensis (50%)	2	1934 bp	65.51	8.27	100.21
qs_9_scaffold_10383 Species: Natronomonas pharaonis (50%)	2	1949 bp	76.19	25.81	100.21
qs_9_scaffold_14108 Species: Halobiforma lacisalsi (50%)	2	1464 bp	66.46	61.34	100.21
qs_9_scaffold_13957 Species: Halorubrum aidingense (50%)	2	1482 bp	70.72	63.70	100.20
qs_9_scaffold_20674 Species: Haladaptatus paucihalophilus (100%)	2	1000 bp	63.10	9.10	100.20
qs_9_scaffold_20680 Species: Halococcus saccharolyticus (50%)	2	1000 bp	74.00	18.40	100.20
qs_9_scaffold_13737 Species: Haloquadratum walsbyi (50%)	2	1503 bp	60.01	6.25	100.20
qs_9_scaffold_20634 Species: Natronococcus jeotgali (50%)	2	1003 bp	64.91	9.57	100.20
qs_9_scaffold_13663 Species: Natronomonas moolapensis (50%)	2	1512 bp	65.21	15.74	100.20

Displaying items 351-400 of 17166 in total

QS_9_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

QS_9_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Processing

Terms of Service

Search Help