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SW_4_UNK

In projects: SW_4

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 21.53 Longest contig: 118.51 Kbp Bin length: 43.57 Mbp GC content: 60.40 %
Contigs count: 16501 Features count: 56802 rRNAs count: 13 tRNAs count: 589

Genome completeness

megabin RP 51 / 55 MC: 43 BSCG 44 / 51 MC: 35 ASCG 38 / 38 MC: 38
Displaying items 501-550 of 16501 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_4_scaffold_13561 4 1324 bp 41.09 5.29 92.45
sw_4_scaffold_16792
Species: Natronomonas moolapensis (100%)
1 1891 bp 45.80 5.29 52.83
sw_4_scaffold_4006 4 2967 bp 50.79 5.29 93.12
sw_4_scaffold_17974 1 1059 bp 37.30 5.29 99.72
sw_4_scaffold_4992 2 2611 bp 44.81 5.29 99.96
sw_4_scaffold_1732 15 7011 bp 40.19 5.29 77.49
sw_4_scaffold_16203 2 1152 bp 57.03 5.30 77.34
sw_4_scaffold_6205 3 2283 bp 37.71 5.30 90.28
sw_4_scaffold_10261
Domain: Bacteria (66.67%)
3 2643 bp 47.48 5.30 90.92
sw_4_scaffold_36254 2 1038 bp 46.63 5.30 57.51
sw_4_scaffold_9365 8 3887 bp 39.57 5.30 89.30
sw_4_scaffold_7828 5 1959 bp 42.47 5.31 91.12
sw_4_scaffold_22959 3 1451 bp 38.46 5.31 75.26
sw_4_scaffold_29141 2 1205 bp 54.52 5.31 69.46
sw_4_scaffold_13640
Species: Halorhabdus tiamatea (50%)
2 1318 bp 45.07 5.31 99.70
sw_4_scaffold_9626
Species: Halococcus saccharolyticus (50%)
2 1694 bp 52.07 5.31 87.66
sw_4_scaffold_18528
Species: Candidatus Nanosalina sp. J07AB43 (100%)
1 1033 bp 41.63 5.32 99.90
sw_4_scaffold_17381 1 1091 bp 50.05 5.32 81.94
sw_4_scaffold_9216
Phylum: Cyanobacteria (66.67%)
3 1747 bp 46.54 5.32 72.30
sw_4_scaffold_15097
Species: Haloferax gibbonsii (50%)
2 1221 bp 49.63 5.32 88.78
sw_4_scaffold_8086
Species: Halogranum salarium (50%)
2 1918 bp 43.01 5.32 85.87
sw_4_scaffold_18110
Species: Halosimplex carlsbadense (50%)
2 1053 bp 55.18 5.32 44.16
sw_4_scaffold_17067
Species: Saccharothrix espanaensis (100%)
1 1108 bp 39.35 5.32 99.91
sw_4_scaffold_18976
Species: Haloferax sulfurifontis (100%)
1 1013 bp 61.90 5.33 99.80
sw_4_scaffold_10497
Species: Latimeria chalumnae (50%)
2 1596 bp 55.08 5.33 103.01
sw_4_scaffold_18567
Species: halophilic archaeon J07HX64 (100%)
1 1032 bp 53.20 5.33 99.71
sw_4_scaffold_7415
Species: RBG_13_Ignavibacteria_36_8_curated (100%)
1 2028 bp 45.66 5.33 39.35
sw_4_scaffold_14236 2 1276 bp 47.81 5.33 39.97
sw_4_scaffold_11709 5 1482 bp 41.77 5.33 92.31
sw_4_scaffold_12999
Species: Salinibacter ruber (50%)
2 1367 bp 53.91 5.34 89.98
sw_4_scaffold_18321
Genus: Haloarcula (100%)
4 1685 bp 58.81 5.34 99.88
sw_4_scaffold_19014 2 1011 bp 43.13 5.34 76.26
sw_4_scaffold_17463
Order: Halobacteriales (66.67%)
3 1087 bp 54.46 5.34 60.72
sw_4_scaffold_27276 3 1215 bp 42.22 5.35 100.49
sw_4_scaffold_30082
Species: CG_Delta_05 (100%)
2 1234 bp 44.25 5.35 97.73
sw_4_scaffold_17157
Species: Halogranum salarium (100%)
2 1102 bp 61.43 5.35 98.82
sw_4_scaffold_13759 3 1308 bp 50.84 5.35 83.03
sw_4_scaffold_11544 2 1496 bp 59.49 5.35 80.01
sw_4_scaffold_9448 5 1715 bp 56.27 5.36 77.14
sw_4_scaffold_14929 1 1232 bp 58.12 5.36 99.84
sw_4_scaffold_11280 5 2110 bp 39.24 5.36 56.21
sw_4_scaffold_24558
Species: Halorhabdus utahensis (66.67%)
3 1475 bp 58.10 5.36 81.56
sw_4_scaffold_8904 4 1792 bp 51.28 5.36 78.52
sw_4_scaffold_15564
Species: Salinibacter ruber (50%)
2 1192 bp 43.04 5.37 85.82
sw_4_scaffold_7411
Species: RIFOXYA2_FULL_Elusimicrobia_47_53_curated (50%)
2 2028 bp 55.23 5.37 97.04
sw_4_scaffold_14912 5 2401 bp 51.69 5.37 41.23
sw_4_scaffold_16534
Species: Halorhabdus tiamatea (100%)
1 1135 bp 51.10 5.37 47.05
sw_4_scaffold_17936
Species: Haloquadratum walsbyi (50%)
2 1062 bp 52.92 5.37 69.49
sw_4_scaffold_29217 1 1229 bp 44.34 5.37 37.84
sw_4_scaffold_12224
Species: Salinibacter ruber (50%)
2 1434 bp 59.48 5.37 67.22
Displaying items 501-550 of 16501 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.