ggKbase home page
Advanced Search
Search Help

SW_4_UNK

In projects: SW_4

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 21.53 Longest contig: 118.51 Kbp Bin length: 43.57 Mbp GC content: 60.40 %
Contigs count: 16501 Features count: 56802 rRNAs count: 13 tRNAs count: 589

Genome completeness

megabin RP 51 / 55 MC: 43 BSCG 44 / 51 MC: 35 ASCG 38 / 38 MC: 38
Displaying items 601-650 of 16501 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_4_scaffold_31434
Species: Halorubrum litoreum (50%)
2 1279 bp 59.66 14.15 41.99
sw_4_scaffold_14108 2 1285 bp 50.19 6.77 42.02
sw_4_scaffold_13462
Species: Halarchaeum acidiphilum (100%)
1 1863 bp 61.30 10.86 42.03
sw_4_scaffold_10107 3 1640 bp 57.13 7.13 42.07
sw_4_scaffold_18526 2 1033 bp 58.37 9.00 42.11
sw_4_scaffold_12586
Species: Haloferax elongans (50%)
2 1401 bp 53.96 8.92 42.18
sw_4_scaffold_12520
Species: uncultured archaeon A07HN63 (50%)
2 1749 bp 54.43 21.27 42.20
sw_4_scaffold_17307 2 1094 bp 56.58 4.84 42.23
sw_4_scaffold_10993
Phylum: Cyanobacteria (50%)
4 1548 bp 39.15 24.22 42.25
sw_4_scaffold_17495 1 1085 bp 55.67 7.47 42.30
sw_4_scaffold_14501
Species: uncultured archaeon A07HB70 (50%)
2 1807 bp 60.82 8.74 42.34
sw_4_scaffold_25075
Species: Salinibacter ruber (100%)
1 1544 bp 51.88 6.93 42.36
sw_4_scaffold_10071 2 1643 bp 51.67 5.72 42.36
sw_4_scaffold_13736 2 1310 bp 52.90 5.95 42.37
sw_4_scaffold_24304
Species: Sphingopyxis sp. MC1 (50%)
2 1409 bp 52.09 5.61 42.37
sw_4_scaffold_23706
Species: Sphingobacterium spiritivorum (50%)
2 1508 bp 52.06 5.97 42.37
sw_4_scaffold_7002 5 3035 bp 45.73 50.54 42.41
sw_4_scaffold_10607 1 1584 bp 58.02 11.87 42.42
sw_4_scaffold_32913 1 1117 bp 45.30 5.91 42.44
sw_4_scaffold_15456 1 1200 bp 54.17 6.67 42.50
sw_4_scaffold_8294 3 1882 bp 49.68 6.85 42.56
sw_4_scaffold_8236 3 1891 bp 49.71 7.24 42.57
sw_4_scaffold_9861 1 1669 bp 59.92 49.82 42.60
sw_4_scaffold_3995
Species: Salinibacter ruber (50%)
6 6051 bp 59.49 47.43 42.64
sw_4_scaffold_9398 3 1723 bp 57.92 7.54 42.66
sw_4_scaffold_7503 4 3129 bp 54.39 7.54 42.67
sw_4_scaffold_14752
Order: Halobacteriales (66.67%)
3 1244 bp 66.96 14.31 42.68
sw_4_scaffold_4322 5 2839 bp 51.78 7.54 42.69
sw_4_scaffold_15263 2 1211 bp 45.25 8.84 42.69
sw_4_scaffold_10640 2 1581 bp 44.28 4.36 42.69
sw_4_scaffold_8415
Species: Halosimplex carlsbadense (100%)
2 2761 bp 67.11 26.11 42.70
sw_4_scaffold_8966 3 1784 bp 53.59 7.12 42.71
sw_4_scaffold_28814
Species: Halosimplex carlsbadense (100%)
1 1194 bp 69.35 15.66 42.71
sw_4_scaffold_20340
Species: Halococcus saccharolyticus (50%)
2 1397 bp 52.90 17.54 42.73
sw_4_scaffold_13166 3 1354 bp 50.30 6.28 42.76
sw_4_scaffold_9123 4 3191 bp 53.09 7.27 42.78
sw_4_scaffold_33818
Species: halophilic archaeon DL31 (100%)
1 1240 bp 63.71 7.90 42.82
sw_4_scaffold_33678
Species: Halococcus salifodinae (50%)
2 1294 bp 57.03 5.95 42.89
sw_4_scaffold_15949
Species: Haloterrigena thermotolerans (100%)
1 1168 bp 47.77 5.91 42.89
sw_4_scaffold_21605
Species: Natronorubrum bangense (50%)
2 1566 bp 48.40 7.98 42.91
sw_4_scaffold_14882
Species: Candidatus Halobonum tyrrellensis (50%)
2 1235 bp 57.25 9.96 43.00
sw_4_scaffold_8667
Class: Halobacteria (66.67%)
3 1828 bp 60.61 24.51 43.00
sw_4_scaffold_28524
Order: Halobacteriales (66.67%)
3 1332 bp 62.54 24.92 43.02
sw_4_scaffold_15013 3 1227 bp 34.23 15.89 43.03
sw_4_scaffold_11305
Species: Thiorhodococcus drewsii (100%)
1 1519 bp 57.14 12.77 43.05
sw_4_scaffold_15557
Species: Burkholderia xenovorans (100%)
1 2020 bp 49.11 7.03 43.07
sw_4_scaffold_12434 2 2180 bp 54.22 5.92 43.07
sw_4_scaffold_4581 3 4448 bp 58.23 6.86 43.10
sw_4_scaffold_28193
Species: Alteromonas macleodii (50%)
2 2060 bp 63.64 23.59 43.11
sw_4_scaffold_7111
Species: Halorubrum aidingense (50%)
2 2087 bp 61.62 28.51 43.12
Displaying items 601-650 of 16501 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.