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SW_4_UNK

In projects: SW_4

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 21.53 Longest contig: 118.51 Kbp Bin length: 43.57 Mbp GC content: 60.40 %
Contigs count: 16501 Features count: 56802 rRNAs count: 13 tRNAs count: 589

Genome completeness

megabin RP 51 / 55 MC: 43 BSCG 44 / 51 MC: 35 ASCG 38 / 38 MC: 38
Displaying items 301-350 of 16501 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_4_scaffold_13558 3 1324 bp 56.57 6.95 100.38
sw_4_scaffold_17956
Order: Halobacteriales (100%)
3 1061 bp 67.30 8.20 100.38
sw_4_scaffold_10522
Phylum: Euryarchaeota (66.67%)
3 1593 bp 39.80 4.02 100.38
sw_4_scaffold_17906
Species: Salinarchaeum sp. Harcht-Bsk1 (50%)
2 1064 bp 67.67 6.11 100.38
sw_4_scaffold_17557
Species: Cyanothece sp. PCC 8801 (100%)
2 1082 bp 48.71 4.25 100.37
sw_4_scaffold_17502 2 1085 bp 66.27 14.84 100.37
sw_4_scaffold_12643 5 2445 bp 64.05 10.47 100.37
sw_4_scaffold_12890
Order: Halobacteriales (66.67%)
3 1375 bp 71.35 18.47 100.36
sw_4_scaffold_7934
Genus: Halorubrum (66.67%)
3 1943 bp 70.97 18.58 100.36
sw_4_scaffold_12604
Order: Halobacteriales (50%)
4 1399 bp 69.62 55.47 100.36
sw_4_scaffold_34108
Species: Halosimplex carlsbadense (50%)
2 1142 bp 61.82 7.79 100.35
sw_4_scaffold_12098
Species: Haladaptatus paucihalophilus (50%)
2 1447 bp 73.26 58.33 100.35
sw_4_scaffold_15777 2 1178 bp 41.85 4.84 100.34
sw_4_scaffold_15782
Species: Natrialba hulunbeirensis (50%)
2 1178 bp 48.30 4.58 100.34
sw_4_scaffold_5909
Species: halophilic archaeon J07HB67 (66.67%)
3 2356 bp 67.02 20.03 100.34
sw_4_scaffold_5877
Order: Halobacteriales (66.67%)
3 2362 bp 71.68 16.17 100.34
sw_4_scaffold_5576 4 3893 bp 35.17 5.78 100.33
sw_4_scaffold_11435
Species: GWA2_OD1_47_21_part (50%)
2 1507 bp 58.00 8.89 100.33
sw_4_scaffold_3896
Order: Natrialbales (66.67%)
3 3017 bp 71.73 29.93 100.33
sw_4_scaffold_6884
Order: Halobacteriales (66.67%)
3 2126 bp 68.81 11.19 100.33
sw_4_scaffold_30986
Species: Callorhinchus milii (50%)
2 1232 bp 56.49 7.39 100.33
sw_4_scaffold_14838
Species: Natronomonas pharaonis (100%)
2 1238 bp 56.14 7.51 100.32
sw_4_scaffold_14788
Species: Natrinema pellirubrum (50%)
2 1241 bp 62.13 105.40 100.32
sw_4_scaffold_10926
Domain: Archaea (66.67%)
3 1555 bp 73.63 43.54 100.32
sw_4_scaffold_23699
Species: uncultured haloarchaeon (50%)
2 1247 bp 69.77 40.58 100.32
sw_4_scaffold_14642
Species: Halorubrum coriense (100%)
2 1250 bp 72.88 22.88 100.32
sw_4_scaffold_14303
Species: Halococcus salifodinae (100%)
2 1271 bp 68.76 37.92 100.32
sw_4_scaffold_6449
Genus: Haloarcula (50%)
4 2225 bp 68.99 27.96 100.32
sw_4_scaffold_27437
Species: Halorhabdus utahensis (50%)
2 1322 bp 63.69 6.96 100.30
sw_4_scaffold_30071
Species: Halorubrum californiense (100%)
2 1331 bp 62.51 10.59 100.30
sw_4_scaffold_9870
Species: Haloquadratum walsbyi (66.67%)
3 1666 bp 55.40 5.82 100.30
sw_4_scaffold_7572
Class: Halobacteria (100%)
3 2001 bp 68.72 11.99 100.30
sw_4_scaffold_19070
Species: Natronomonas moolapensis (50%)
2 1008 bp 68.95 22.92 100.30
sw_4_scaffold_19078
Species: Natronomonas moolapensis (50%)
2 1008 bp 72.62 10.81 100.30
sw_4_scaffold_5794
Genus: Haloarcula (66.67%)
3 2381 bp 66.99 39.14 100.29
sw_4_scaffold_18748
Species: Natronobacterium gregoryi (100%)
2 1023 bp 66.67 6.74 100.29
sw_4_scaffold_7270
Species: Natronomonas pharaonis (100%)
2 2055 bp 68.71 44.62 100.29
sw_4_scaffold_12915
Species: Haladaptatus paucihalophilus (50%)
2 1373 bp 74.95 16.75 100.29
sw_4_scaffold_35305
Species: Halovivax ruber (50%)
2 1032 bp 75.00 14.83 100.29
sw_4_scaffold_18500
Species: Halorubrum aidingense (66.67%)
3 1035 bp 66.09 8.02 100.29
sw_4_scaffold_18233
Species: Haloarcula vallismortis (50%)
2 1047 bp 65.14 8.79 100.29
sw_4_scaffold_12589
Species: Halogranum salarium (50%)
2 1400 bp 69.79 13.79 100.29
sw_4_scaffold_17989
Species: Synechococcus elongatus (50%)
2 1059 bp 60.25 6.89 100.28
sw_4_scaffold_17888
Species: Natronomonas pharaonis (100%)
2 1065 bp 70.70 11.17 100.28
sw_4_scaffold_5352
Order: Halobacteriales (100%)
3 2513 bp 59.73 8.96 100.28
sw_4_scaffold_24299
Species: Halosimplex carlsbadense (100%)
2 1439 bp 71.09 14.87 100.28
sw_4_scaffold_20469
Genus: Natronomonas (66.67%)
3 1445 bp 71.56 40.48 100.28
sw_4_scaffold_17411
Genus: Natronomonas (66.67%)
3 1089 bp 73.19 27.82 100.28
sw_4_scaffold_32393
Species: halophilic archaeon J07HX64 (50%)
2 1092 bp 69.96 7.51 100.28
sw_4_scaffold_17287
Species: Halosimplex carlsbadense (50%)
2 1095 bp 58.72 6.39 100.27
Displaying items 301-350 of 16501 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.