ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 21.53 Longest contig: 118.51 Kbp Bin length: 43.57 Mbp GC content: 60.40 %

Contigs count: 16501 Features count: 56802 rRNAs count: 13 tRNAs count: 589

Genome completeness

megabin RP 51 / 55 MC: 43 BSCG 44 / 51 MC: 35 ASCG 38 / 38 MC: 38

Displaying items 401-450 of 16501 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
sw_4_scaffold_17455 Species: Halogeometricum borinquense (50%)	2	1087 bp	59.71	6.26	100.18
sw_4_scaffold_18641 Species: Halococcus salifodinae (50%)	2	1638 bp	65.20	7.94	100.18
sw_4_scaffold_17322 Species: Halococcus saccharolyticus (50%)	2	1093 bp	68.16	14.00	100.18
sw_4_scaffold_12200	3	2740 bp	58.94	7.19	100.18
sw_4_scaffold_17276 Species: GWA1_OP11_43_11 (50%)	2	1096 bp	41.70	4.20	100.18
sw_4_scaffold_10026 Species: Natronomonas pharaonis (100%)	2	1647 bp	62.66	15.06	100.18
sw_4_scaffold_17184 Species: Halogranum salarium (50%)	2	1647 bp	64.72	9.05	100.18
sw_4_scaffold_17210 Class: Halobacteria (66.67%)	3	1099 bp	72.16	18.65	100.18
sw_4_scaffold_31134 Species: Halococcus saccharolyticus (66.67%)	3	1108 bp	72.02	9.30	100.18
sw_4_scaffold_16988 Species: Haloterrigena limicola (50%)	2	1111 bp	73.27	19.62	100.18
sw_4_scaffold_16829 Species: Halorhabdus tiamatea (100%)	2	1120 bp	58.84	9.91	100.18
sw_4_scaffold_9471 Species: Natronomonas moolapensis (50%)	2	1713 bp	70.11	35.20	100.18
sw_4_scaffold_16260 Species: Halorubrum coriense (100%)	2	1150 bp	63.65	9.83	100.17
sw_4_scaffold_16142 Species: Halococcus salifodinae (100%)	2	1156 bp	69.03	39.71	100.17
sw_4_scaffold_16145 Species: Halococcus saccharolyticus (50%)	2	1156 bp	69.90	24.22	100.17
sw_4_scaffold_9207 Species: Halorhabdus utahensis (100%)	2	1749 bp	69.07	9.66	100.17
sw_4_scaffold_15938 Order: Halobacteriales (75%)	4	1168 bp	64.04	9.33	100.17
sw_4_scaffold_15797 Species: Natrialba magadii (50%)	2	1177 bp	70.35	11.98	100.17
sw_4_scaffold_15758 Species: Halosimplex carlsbadense (50%)	2	1180 bp	72.37	35.00	100.17
sw_4_scaffold_8818 Species: Haloterrigena turkmenica (50%)	2	1806 bp	70.49	22.81	100.17
sw_4_scaffold_15313 Species: Methanolobus tindarius (50%)	2	1207 bp	49.63	9.69	100.17
sw_4_scaffold_15327 Species: Halococcus thailandensis (50%)	2	1207 bp	75.97	36.29	100.17
sw_4_scaffold_14994 Species: Haladaptatus paucihalophilus (50%)	2	1228 bp	54.23	4.56	100.16
sw_4_scaffold_14847 Species: Natronomonas moolapensis (50%)	2	1237 bp	73.65	32.58	100.16
sw_4_scaffold_18152 Species: Halococcus hamelinensis (100%)	2	1881 bp	64.65	7.50	100.16
sw_4_scaffold_14565 Species: Haloferax prahovense (50%)	2	1255 bp	51.71	5.02	100.16
sw_4_scaffold_14472 Species: RBG_13_Actinobacteria_63_9_curated (50%)	2	1261 bp	60.75	10.47	100.16
sw_4_scaffold_14054 Species: Haloarcula argentinensis (50%)	2	1288 bp	72.59	49.77	100.16
sw_4_scaffold_14014 Order: Halobacteriales (66.67%)	3	1291 bp	66.54	9.60	100.16
sw_4_scaffold_13970 Species: Haloferax sp. BAB2207 (50%)	2	1294 bp	69.40	25.35	100.16
sw_4_scaffold_28122 Species: Haloferax sp. ATCC BAA-645 (100%)	2	1300 bp	54.38	5.08	100.15
sw_4_scaffold_13678 Species: Haloferax alexandrinus (50%)	2	1315 bp	61.83	7.30	100.15
sw_4_scaffold_13601 Species: Natronomonas pharaonis (100%)	2	1321 bp	66.54	55.56	100.15
sw_4_scaffold_13544 Class: Halobacteria (100%)	3	1983 bp	62.78	7.36	100.15
sw_4_scaffold_27252 Species: Halomicrobium mukohataei (50%)	2	1351 bp	72.39	11.40	100.15
sw_4_scaffold_7397 Species: Natronomonas moolapensis (50%)	2	2031 bp	64.55	13.54	100.15
sw_4_scaffold_13128 Species: Halostagnicola sp. A56 (66.67%)	3	1357 bp	62.71	12.75	100.15
sw_4_scaffold_3473 Species: Natronomonas pharaonis (66.67%)	3	4074 bp	64.31	17.18	100.15
sw_4_scaffold_13053 Species: Haloterrigena turkmenica (100%)	2	1363 bp	57.89	5.58	100.15
sw_4_scaffold_23515 Species: Halogeometricum borinquense (66.67%)	3	2046 bp	68.18	8.94	100.15
sw_4_scaffold_7326 Species: Natronomonas pharaonis (50%)	2	2046 bp	68.52	34.60	100.15
sw_4_scaffold_28253 Species: Salinarchaeum sp. Harcht-Bsk1 (50%)	2	1366 bp	61.35	16.62	100.15
sw_4_scaffold_16830 Class: Halobacteria (100%)	3	1381 bp	70.67	17.60	100.15
sw_4_scaffold_12750 Species: Natronomonas moolapensis (50%)	2	1387 bp	67.05	8.87	100.14
sw_4_scaffold_12569 Species: Haloarcula japonica (50%)	2	1402 bp	74.61	42.87	100.14
sw_4_scaffold_12539 Species: Propionibacterium acidipropionici (50%)	2	1405 bp	58.58	8.47	100.14
sw_4_scaffold_6839 Species: Halosimplex carlsbadense (100%)	2	2136 bp	68.31	35.44	100.14
sw_4_scaffold_19538 Species: Pelodictyon phaeoclathratiforme (50%)	2	1432 bp	68.30	9.85	100.14
sw_4_scaffold_7241 Class: Halobacteria (66.67%)	3	2873 bp	58.30	10.48	100.14
sw_4_scaffold_12159 Species: Halorubrum sp. J07HR59 (50%)	2	1441 bp	64.12	8.61	100.14

Displaying items 401-450 of 16501 in total

SW_4_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

SW_4_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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