ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 22.55 Longest contig: 253.36 Kbp Bin length: 44.06 Mbp GC content: 60.59 %

Contigs count: 15674 Features count: 56776 rRNAs count: 17 tRNAs count: 494

Genome completeness

megabin RP 51 / 55 MC: 43 BSCG 50 / 51 MC: 38 ASCG 38 / 38 MC: 38

Displaying items 451-500 of 15674 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
sw_6_scaffold_10908 Species: Haloferax gibbonsii (50%)	2	1428 bp	60.71	6.58	100.21
sw_6_scaffold_12384 Class: Halobacteria (100%)	3	1922 bp	71.85	14.31	100.21
sw_6_scaffold_10564 Order: Halobacteriales (66.67%)	3	1461 bp	71.66	33.54	100.21
sw_6_scaffold_6878 Species: Natronomonas pharaonis (100%)	2	1976 bp	64.12	22.37	100.20
sw_6_scaffold_10366 Species: Halococcus thailandensis (50%)	2	1482 bp	69.16	19.23	100.20
sw_6_scaffold_10337 Species: Reithrodontomys fulvescens (50%)	2	1485 bp	48.96	3.57	100.20
sw_6_scaffold_20285 Species: Thermus sp. 2.9 (50%)	2	1497 bp	62.19	52.91	100.20
sw_6_scaffold_17957 Species: Salinarchaeum sp. Harcht-Bsk1 (50%)	2	1000 bp	71.30	10.60	100.20
sw_6_scaffold_10167	2	1500 bp	42.40	5.40	100.20
sw_6_scaffold_17880 Species: Haladaptatus paucihalophilus (50%)	2	1003 bp	67.70	8.87	100.20
sw_6_scaffold_10344 Species: Haloarcula argentinensis (50%)	2	2006 bp	70.04	13.81	100.20
sw_6_scaffold_17813 Species: Thiolapillus brandeum (50%)	2	1006 bp	54.57	9.54	100.20
sw_6_scaffold_17823 Species: Natronomonas pharaonis (100%)	2	1006 bp	68.99	17.50	100.20
sw_6_scaffold_17741 Species: Haloarcula amylolytica (50%)	2	1009 bp	65.31	19.92	100.20
sw_6_scaffold_17582 Species: Natronomonas pharaonis (50%)	2	1015 bp	71.13	24.53	100.20
sw_6_scaffold_17525 Species: Halosimplex carlsbadense (100%)	2	1018 bp	67.09	8.35	100.20
sw_6_scaffold_17304 Species: Salinarchaeum sp. Harcht-Bsk1 (50%)	2	1027 bp	65.92	13.44	100.20
sw_6_scaffold_17231	2	1030 bp	50.49	5.05	100.19
sw_6_scaffold_17038 Species: Haloferax mucosum (100%)	2	1039 bp	56.50	6.26	100.19
sw_6_scaffold_16842 Species: Halalkalicoccus jeotgali (50%)	2	1048 bp	55.92	6.58	100.19
sw_6_scaffold_16498 Species: Halococcus salifodinae (100%)	2	1063 bp	65.29	11.10	100.19
sw_6_scaffold_16510 Species: Anaeromyxobacter sp. Fw109-5 (50%)	2	1063 bp	73.19	11.10	100.19
sw_6_scaffold_16277 Species: GWD2_Bacteroidetes_33_33_curated (50%)	2	1075 bp	50.98	3.44	100.19
sw_6_scaffold_33272 Species: Halostagnicola sp. A56 (100%)	2	1078 bp	69.20	12.24	100.19
sw_6_scaffold_16172 Species: Haloterrigena salina (100%)	2	1081 bp	66.60	12.86	100.18
sw_6_scaffold_16173 Species: Haladaptatus paucihalophilus (50%)	2	1081 bp	63.92	5.55	100.18
sw_6_scaffold_16125 Species: halophilic archaeon J07HB67 (50%)	2	1084 bp	65.31	42.71	100.18
sw_6_scaffold_16047 Species: Natronomonas pharaonis (50%)	2	1087 bp	70.65	15.73	100.18
sw_6_scaffold_8975 Species: Halorubrum lipolyticum (50%)	2	1638 bp	74.54	20.94	100.18
sw_6_scaffold_36888 Species: Halococcus morrhuae (50%)	2	1096 bp	65.05	17.34	100.18
sw_6_scaffold_15799 Species: Haloterrigena thermotolerans (50%)	2	1099 bp	65.61	5.64	100.18
sw_6_scaffold_8885 Species: Pandoraea pnomenusa (50%)	2	1650 bp	56.36	6.91	100.18
sw_6_scaffold_3804 Species: Halococcus hamelinensis (60%)	5	4417 bp	66.45	39.60	100.18
sw_6_scaffold_11159 Order: Halobacteriales (75%)	4	3330 bp	64.26	13.81	100.18
sw_6_scaffold_15514 Species: halophilic archaeon J07HX5 (50%)	2	1114 bp	66.25	26.39	100.18
sw_6_scaffold_15295 Species: Halopiger xanaduensis (50%)	2	1126 bp	69.72	14.12	100.18
sw_6_scaffold_15328 Species: Haloferax sulfurifontis (50%)	2	1701 bp	68.08	14.70	100.18
sw_6_scaffold_15013 Species: Halosimplex carlsbadense (100%)	2	1141 bp	73.36	15.60	100.18
sw_6_scaffold_14682 Species: Natronomonas pharaonis (50%)	2	1162 bp	68.85	35.80	100.17
sw_6_scaffold_15711 Species: Halanaeroarchaeum sulfurireducens (50%)	2	1746 bp	67.41	28.98	100.17
sw_6_scaffold_5768 Species: Natronomonas pharaonis (100%)	3	2911 bp	71.80	31.78	100.17
sw_6_scaffold_14463 Species: Halomicrobium mukohataei (50%)	2	1174 bp	72.74	18.31	100.17
sw_6_scaffold_14405 Species: marine sediment metagenome (50%)	2	1177 bp	60.66	7.65	100.17
sw_6_scaffold_5372 Phylum: Bacteroidetes (66.67%)	3	2354 bp	64.10	13.00	100.17
sw_6_scaffold_3106 Species: Halorhabdus tiamatea (50%)	2	3540 bp	65.00	23.95	100.17
sw_6_scaffold_8012 Species: Natronorubrum tibetense (50%)	2	1779 bp	46.09	6.80	100.17
sw_6_scaffold_8484 Species: Natronomonas pharaonis (50%)	2	2372 bp	70.19	23.86	100.17
sw_6_scaffold_14185 Species: Halosimplex carlsbadense (100%)	2	1189 bp	73.42	14.30	100.17
sw_6_scaffold_14140 Species: Natronomonas pharaonis (100%)	2	1192 bp	65.77	16.02	100.17
sw_6_scaffold_13941 Species: Natronomonas moolapensis (100%)	3	1204 bp	70.68	27.66	100.17

Displaying items 451-500 of 15674 in total

SW_6_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

SW_6_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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