ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 22.55 Longest contig: 253.36 Kbp Bin length: 44.06 Mbp GC content: 60.59 %

Contigs count: 15674 Features count: 56776 rRNAs count: 17 tRNAs count: 494

Genome completeness

megabin RP 51 / 55 MC: 43 BSCG 50 / 51 MC: 38 ASCG 38 / 38 MC: 38

Displaying items 15151-15200 of 15674 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
sw_6_scaffold_11470 Species: uncultured archaeon A07HR67 (100%)	2	1378 bp	69.81	20.46	100.15
sw_6_scaffold_6507 Species: Hirschia baltica (100%)	2	2055 bp	65.99	8.56	100.15
sw_6_scaffold_11622	3	1366 bp	74.96	19.55	100.15
sw_6_scaffold_11728 Species: Deinococcus peraridilitoris (50%)	2	1357 bp	73.18	12.23	100.15
sw_6_scaffold_12591 Species: Candidatus Halobonum tyrrellensis (50%)	2	2031 bp	55.59	5.37	100.15
sw_6_scaffold_6710 Species: halophilic archaeon DL31 (66.67%)	3	2010 bp	65.37	11.84	100.15
sw_6_scaffold_12052 Species: Halorubrum litoreum (50%)	2	1333 bp	76.97	16.28	100.15
sw_6_scaffold_12201 Species: halophilic archaeon J07HB67 (100%)	2	1321 bp	67.52	33.31	100.15
sw_6_scaffold_6905 Species: Haloferax lucentense (50%)	2	1971 bp	61.29	19.38	100.15
sw_6_scaffold_6922 Species: Halococcus salifodinae (100%)	2	1968 bp	70.38	30.44	100.15
sw_6_scaffold_12480 Species: Isosphaera pallida (50%)	2	1300 bp	64.15	13.85	100.15
sw_6_scaffold_12484 Species: Candidatus Halobonum tyrrellensis (50%)	2	1300 bp	69.31	21.38	100.15
sw_6_scaffold_12600 Species: Natronomonas moolapensis (50%)	2	1291 bp	73.59	40.67	100.16
sw_6_scaffold_26677 Species: Halovivax asiaticus (50%)	2	1282 bp	63.81	11.00	100.16
sw_6_scaffold_12763 Species: Halococcus thailandensis (100%)	2	1279 bp	56.06	7.97	100.16
sw_6_scaffold_12983 Species: Halosimplex carlsbadense (50%)	2	1264 bp	71.91	14.32	100.16
sw_6_scaffold_7305 Species: Haloterrigena salina (100%)	2	1893 bp	77.23	47.91	100.16
sw_6_scaffold_13243 Species: Haloferax larsenii (50%)	2	1246 bp	56.10	8.99	100.16
sw_6_scaffold_23752 Species: Actinokineospora spheciospongiae (50%)	2	1243 bp	72.57	16.65	100.16
sw_6_scaffold_13584 Species: Halococcus saccharolyticus (50%)	2	1225 bp	72.00	21.80	100.16
sw_6_scaffold_11935 Species: Salinibacter ruber (100%)	2	1830 bp	67.92	69.07	100.16
sw_6_scaffold_13780 Species: Halococcus morrhuae (50%)	2	1213 bp	53.17	8.90	100.16
sw_6_scaffold_13842 Species: Halosimplex carlsbadense (100%)	2	1210 bp	71.98	16.94	100.16
sw_6_scaffold_7829 Species: Halorubrum sp. AJ67 (100%)	2	1809 bp	72.25	25.70	100.17
sw_6_scaffold_13941 Species: Natronomonas moolapensis (100%)	3	1204 bp	70.68	27.66	100.17
sw_6_scaffold_14140 Species: Natronomonas pharaonis (100%)	2	1192 bp	65.77	16.02	100.17
sw_6_scaffold_14185 Species: Halosimplex carlsbadense (100%)	2	1189 bp	73.42	14.30	100.17
sw_6_scaffold_8012 Species: Natronorubrum tibetense (50%)	2	1779 bp	46.09	6.80	100.17
sw_6_scaffold_8484 Species: Natronomonas pharaonis (50%)	2	2372 bp	70.19	23.86	100.17
sw_6_scaffold_3106 Species: Halorhabdus tiamatea (50%)	2	3540 bp	65.00	23.95	100.17
sw_6_scaffold_14405 Species: marine sediment metagenome (50%)	2	1177 bp	60.66	7.65	100.17
sw_6_scaffold_5372 Phylum: Bacteroidetes (66.67%)	3	2354 bp	64.10	13.00	100.17
sw_6_scaffold_14463 Species: Halomicrobium mukohataei (50%)	2	1174 bp	72.74	18.31	100.17
sw_6_scaffold_5768 Species: Natronomonas pharaonis (100%)	3	2911 bp	71.80	31.78	100.17
sw_6_scaffold_15711 Species: Halanaeroarchaeum sulfurireducens (50%)	2	1746 bp	67.41	28.98	100.17
sw_6_scaffold_14682 Species: Natronomonas pharaonis (50%)	2	1162 bp	68.85	35.80	100.17
sw_6_scaffold_15013 Species: Halosimplex carlsbadense (100%)	2	1141 bp	73.36	15.60	100.18
sw_6_scaffold_15328 Species: Haloferax sulfurifontis (50%)	2	1701 bp	68.08	14.70	100.18
sw_6_scaffold_15295 Species: Halopiger xanaduensis (50%)	2	1126 bp	69.72	14.12	100.18
sw_6_scaffold_15514 Species: halophilic archaeon J07HX5 (50%)	2	1114 bp	66.25	26.39	100.18
sw_6_scaffold_11159 Order: Halobacteriales (75%)	4	3330 bp	64.26	13.81	100.18
sw_6_scaffold_3804 Species: Halococcus hamelinensis (60%)	5	4417 bp	66.45	39.60	100.18
sw_6_scaffold_8885 Species: Pandoraea pnomenusa (50%)	2	1650 bp	56.36	6.91	100.18
sw_6_scaffold_15799 Species: Haloterrigena thermotolerans (50%)	2	1099 bp	65.61	5.64	100.18
sw_6_scaffold_36888 Species: Halococcus morrhuae (50%)	2	1096 bp	65.05	17.34	100.18
sw_6_scaffold_8975 Species: Halorubrum lipolyticum (50%)	2	1638 bp	74.54	20.94	100.18
sw_6_scaffold_16047 Species: Natronomonas pharaonis (50%)	2	1087 bp	70.65	15.73	100.18
sw_6_scaffold_16125 Species: halophilic archaeon J07HB67 (50%)	2	1084 bp	65.31	42.71	100.18
sw_6_scaffold_16172 Species: Haloterrigena salina (100%)	2	1081 bp	66.60	12.86	100.18
sw_6_scaffold_16173 Species: Haladaptatus paucihalophilus (50%)	2	1081 bp	63.92	5.55	100.18

Displaying items 15151-15200 of 15674 in total

SW_6_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

SW_6_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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