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sw_7_scaffold_252_2

Organism: SW_7_UNK

megabin RP 50 / 55 MC: 47 BSCG 50 / 51 MC: 41 ASCG 38 / 38 MC: 37
Location: comp(3412..5961)

Top 3 Functional Annotations

Value Algorithm Source
Ribosome biogenesis protein tsr1, putative n=1 Tax=Ricinus communis RepID=B9R8L9_RICCO similarity UNIREF
DB: UNIREF100
  • Identity: 36.5
  • Coverage: 864.0
  • Bit_score: 458
  • Evalue 1.40e-125
Uncharacterized protein {ECO:0000313|EnsemblPlants:Bo6g018680.1}; TaxID=109376 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; similarity UNIPROT
DB: UniProtKB
  • Identity: 34.9
  • Coverage: 866.0
  • Bit_score: 462
  • Evalue 1.10e-126
ribosome biogenesis protein tsr1, putative; K14799 pre-rRNA-processing protein TSR1 similarity KEGG
DB: KEGG
  • Identity: 36.5
  • Coverage: 864.0
  • Bit_score: 458
  • Evalue 4.60e-126

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Taxonomy

Brassica oleracea → Brassica → Brassicales → rosids → Streptophyta → Viridiplantae

Sequences

DNA sequence
Length: 2550
ATGCTGAGCGACGCTGCCCTTGACATCGCTTATCAGCACATGGGTGGGGGAGCGAGGCAGCAGCGGAATAAGGCGCACAAGCGGGGAAAGCACTCTGCGCCTAGCAATCGCAACCTCCGCAGCAGCCGCCGCTCCGTTGCGCTCTCCACGGGCCGCGCTGTGGGCAAGCAGGCCGGGCGATCCCAGCGGCGGAAACGGAAGGCCGAGCGTCTCCGCGAGCAGCAACGCCAGCGGCGTGCTGCAGACGGTCGCCCGCCCAAGGTGGTGGCAGTGGTGCAACTGACAGAGGATGCCTTGCCCGAGCGGCTCCTGCCCCGCCTCGGCCTGCCCGCAACCTCCAGCTCCACCCTGCCTCTGCCCGCCCACCGCACGCGCCTGCACTTCGTGCATGTGCCGATCGCCTCCGGCCCCCCTTCCGCCTGTGCCGACGCCGCCAAAGTTGCTGACTGCCTCCTTCTTCTTGTTTCCACCGCCTCCGCCAACGTATCCTTCTCTCTCTCAGCCAAAGCCGCCTCCAACCTCCATGTCCTCCGGCTCCACGGGCACCTCCCCGCTGTCTGTGCCCTCGATGGCCTCCACGCCCTCCCAACTCACTCCCGCTCACATGTCCTGCGGTCCACGCGATCGCTTCTTGCCCGCTTTCTGCCGCAGCACGACGCCCGCCTCGTCGGCGCTGACTCGCCCTCCGCCCCCTCAGAGCTCACTCGGTCTCTATGTAACTGCCAACCCTCCCCCCCTTCCTGGCGCTCCTCTCGTCCCTACCTGCTATGCCAATACGCCGAGCTTGAGACTTCTCACAACAGCGCCACCCGCCTCGCTCTTCATGGGTACGTCCGCGGACAGAGTTTCTCCGCCGACCAGCTCGTCCACCTTCCCGATCGCGGCGAGTTCCAGCTGCAGCGCATTGACGTCCTATGTGACCCTTACCCGCTAAAGCTGAAGCATCGCGCTTGCGCACACGCTAGGCCCGATGGAGATACGGATATGGAATCCAATAGGTGTCAGCAGTGCACCGTCTCGCTTCACCCTTCACCCGAGACGCAAGAATCGCTTCAGCGCGAAAATGTGTCCGACGAGCAGATGCGCGATGGCGATACTGCTGACCCTGATGGCGATGACAAGACATGGCCTACGGATGAAGAGATCCGTGCTGCCGAGGCTGAGCGTAGACGACTGAAGCAGAAAATGCAACCCGGAACGTCAGAGTACCAGAGTTCGTGGCTGCTTGATCAACGTCTGCATGACCTTTACGATGGTGAGCAGAGCGAGGAAGGTATGGCAGATGCTGTAAGTGGAGAGCTTGACGATGAGCTCATGTCCGACAATGCACTAGAAAGAAGAGCTGTATCCGATGCATTCAATGCAATGGAGCAAGAAAGAGAGGATGACACCGAGACGATCAATGGTGGCGCATCGATCGATGGTGATGCTAATGACGATGCTCTCCTCGAAGACGATAGAGATAACGCCGAAGAGCATGAGAAAGAGAAGACTGAAAACGAGCGCCGAAAGCGCGAGCGAGAGATCATGGAAGATGCAGAATTCCCAGATGAAGTTGAAACTCCCGAAGATCAACCTGCACGCCGGCGATTTTCCAAATACCGCGCCTTACGCTCTTTTCGAACAACCCCGTGGAATGCAAGAGCAGACCTTCCACAGGAGTACAACAAGATCTTTGCATTTGATAGCCTTCGACGGGCTCAGAAATTAGCTGCTGAAGAACAACGAGAGCGATCTGAGCGGGATAATGCCGCACCCGTTGGAAGCTTTATTCGTCTTGTCCTTGAGGGATTGTCAACTGATGTCGCTCAAGAGGTTGTTGCTCAAAACGCACCTCTTACAGCACTTGGGTTGCTTTTGCATGAAGGAAAGCTATCTGTGAACCACTATCGCATCTCGCTTTATGAGGACAGCGCCGTCACGCCCAATACTTGCGAGTTTGGAGACGACCATGAGAATGTGAATCACACGCGTGGGCTTCGTAGTAAAGACGAAATCGTGGTTGAAGCGGGCTTTCGGCGGCACAGAGTGCGACCGATTTATTCCACTGATGATACTGGCGACAAGCACAAGTTTTTGCGCTATCTTCATGCGGGTGTGCCGGCAGTTGCAAGCTTCTACAGCCCCATCATGTATCCATCAGCCCCAGGTCTTGTTTACACCCGAGTCGGCGTCTCTGCAAGTGACAACGGAGAGGCGATGGGCGGAAACTATTATGGTCAGGAGACATTGGTTGGCACTGGGCGTGTTGCTGGCAACGATCCTTGGCGTGTGGTTGTGAAGCGAGCCATCTTAACTGGCATCCCAACCAAAGTGCAAAAGAAGAAAGCTTCTGTGCGCAATATGTTCTACTCGCCCGATGACGTGCGATACTTCAAACCTGTTGATCTCTTCACCAAGCACGGGAAGCATGGGAGCATCAAGGAACCTGTTGGAACGCACGGCGCAATGAAGTGCCGCTTCAACGCACCGGTGCATCAACACGATACAGTGTGCCTGGCACTGTACAAGAGGATCTTTCCGCCGTATCCAGTCCAGATCTCTGAATAG
PROTEIN sequence
Length: 850
MLSDAALDIAYQHMGGGARQQRNKAHKRGKHSAPSNRNLRSSRRSVALSTGRAVGKQAGRSQRRKRKAERLREQQRQRRAADGRPPKVVAVVQLTEDALPERLLPRLGLPATSSSTLPLPAHRTRLHFVHVPIASGPPSACADAAKVADCLLLLVSTASANVSFSLSAKAASNLHVLRLHGHLPAVCALDGLHALPTHSRSHVLRSTRSLLARFLPQHDARLVGADSPSAPSELTRSLCNCQPSPPSWRSSRPYLLCQYAELETSHNSATRLALHGYVRGQSFSADQLVHLPDRGEFQLQRIDVLCDPYPLKLKHRACAHARPDGDTDMESNRCQQCTVSLHPSPETQESLQRENVSDEQMRDGDTADPDGDDKTWPTDEEIRAAEAERRRLKQKMQPGTSEYQSSWLLDQRLHDLYDGEQSEEGMADAVSGELDDELMSDNALERRAVSDAFNAMEQEREDDTETINGGASIDGDANDDALLEDDRDNAEEHEKEKTENERRKREREIMEDAEFPDEVETPEDQPARRRFSKYRALRSFRTTPWNARADLPQEYNKIFAFDSLRRAQKLAAEEQRERSERDNAAPVGSFIRLVLEGLSTDVAQEVVAQNAPLTALGLLLHEGKLSVNHYRISLYEDSAVTPNTCEFGDDHENVNHTRGLRSKDEIVVEAGFRRHRVRPIYSTDDTGDKHKFLRYLHAGVPAVASFYSPIMYPSAPGLVYTRVGVSASDNGEAMGGNYYGQETLVGTGRVAGNDPWRVVVKRAILTGIPTKVQKKKASVRNMFYSPDDVRYFKPVDLFTKHGKHGSIKEPVGTHGAMKCRFNAPVHQHDTVCLALYKRIFPPYPVQISE*