ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 17.32 Longest contig: 151.13 Kbp Bin length: 41.32 Mbp GC content: 58.51 %

Contigs count: 16401 Features count: 53796 rRNAs count: 12 tRNAs count: 452

Genome completeness

megabin RP 51 / 55 MC: 46 BSCG 48 / 51 MC: 40 ASCG 38 / 38 MC: 38

Displaying items 451-500 of 16401 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
sw_8_scaffold_15805 Species: CG_Micra_05 (50%)	2	1111 bp	46.62	3.78	100.18
sw_8_scaffold_13603 Species: Halococcus saccharolyticus (100%)	2	1668 bp	66.97	18.59	100.18
sw_8_scaffold_15742 Species: Haloquadratum walsbyi (50%)	2	1114 bp	49.37	7.45	100.18
sw_8_scaffold_15444 Species: Halococcus salifodinae (100%)	2	1129 bp	68.47	18.95	100.18
sw_8_scaffold_15303 Species: Syntrophomonas zehnderi (50%)	2	1135 bp	47.93	6.17	100.18
sw_8_scaffold_15327 Species: Halorhabdus tiamatea (50%)	2	1135 bp	61.15	8.28	100.18
sw_8_scaffold_8303 Species: Wolbachia endosymbiont of Drosophila melanogaster (50%)	2	1716 bp	39.57	86.60	100.18
sw_8_scaffold_15074 Species: Haloarcula hispanica (50%)	2	1147 bp	69.83	6.45	100.17
sw_8_scaffold_15078 Species: Halorubrum sp. AJ67 (50%)	2	1147 bp	62.69	16.13	100.17
sw_8_scaffold_15080 Species: Haloarcula sinaiiensis (50%)	2	1147 bp	59.29	6.19	100.17
sw_8_scaffold_3727	3	2869 bp	53.82	12.09	100.17
sw_8_scaffold_14769 Species: Haloquadratum walsbyi (50%)	2	1162 bp	72.38	15.49	100.17
sw_8_scaffold_29882 Species: Haloarcula vallismortis (50%)	2	1162 bp	55.08	5.25	100.17
sw_8_scaffold_14699 Species: Natronomonas pharaonis (50%)	2	1165 bp	67.30	27.38	100.17
sw_8_scaffold_7970 Order: Halobacteriales (66.67%)	3	1764 bp	50.91	6.07	100.17
sw_8_scaffold_7365 Species: Halobacterium sp. DL1 (60%)	5	2959 bp	58.70	30.28	100.17
sw_8_scaffold_4281 Species: Haloarcula vallismortis (100%)	2	4154 bp	61.46	21.50	100.17
sw_8_scaffold_14053 Species: halophilic archaeon DL31 (100%)	2	1204 bp	71.01	9.80	100.17
sw_8_scaffold_14008 Species: Halobiforma lacisalsi (100%)	2	1207 bp	58.57	5.63	100.17
sw_8_scaffold_13956 Species: Natronomonas pharaonis (100%)	2	1210 bp	73.39	23.39	100.16
sw_8_scaffold_4846 Species: Halosimplex carlsbadense (50%)	2	2429 bp	67.52	16.01	100.16
sw_8_scaffold_13852 Species: Halococcus saccharolyticus (50%)	2	1216 bp	66.04	18.42	100.16
sw_8_scaffold_13768 Species: Halorubrum tebenquichense (50%)	2	1222 bp	70.38	8.02	100.16
sw_8_scaffold_13566 Species: Natrialba chahannaoensis (50%)	2	1234 bp	67.59	12.64	100.16
sw_8_scaffold_24587 Species: Halococcus saccharolyticus (100%)	2	1249 bp	66.37	12.09	100.16
sw_8_scaffold_5953 Species: Natronomonas moolapensis (50%)	2	2522 bp	63.44	27.00	100.16
sw_8_scaffold_13058 Species: sediment metagenome (50%)	2	1264 bp	63.05	7.99	100.16
sw_8_scaffold_12762 Species: halophilic archaeon J07HX64 (50%)	2	1285 bp	68.25	36.65	100.16
sw_8_scaffold_12675 Species: halophilic archaeon J07HX64 (50%)	2	1291 bp	72.66	12.78	100.16
sw_8_scaffold_12584 Species: GWA2_Bdellovibrionales_49_15_curated (50%)	2	1297 bp	50.66	4.32	100.15
sw_8_scaffold_23162 Species: Natronomonas pharaonis (100%)	2	1300 bp	73.15	29.69	100.15
sw_8_scaffold_23119 Species: bacterium UASB270 (100%)	2	1306 bp	67.53	12.94	100.15
sw_8_scaffold_12412 Species: Natronomonas pharaonis (50%)	2	1309 bp	68.07	37.82	100.15
sw_8_scaffold_6689 Species: Natronomonas pharaonis (100%)	2	1968 bp	62.65	19.16	100.15
sw_8_scaffold_26184 Species: Halogranum salarium (50%)	2	1312 bp	61.20	6.71	100.15
sw_8_scaffold_30852 Species: Haloquadratum walsbyi (100%)	2	1312 bp	64.86	7.16	100.15
sw_8_scaffold_6672 Species: Natronomonas moolapensis (50%)	2	1971 bp	70.27	45.97	100.15
sw_8_scaffold_2953 Species: Haloarcula sp. CBA1115 (50%)	2	3963 bp	55.16	16.63	100.15
sw_8_scaffold_21294 Species: Halococcus salifodinae (50%)	2	1333 bp	67.82	17.93	100.15
sw_8_scaffold_12123 Species: halophilic archaeon J07HX5 (100%)	2	1333 bp	66.17	18.60	100.15
sw_8_scaffold_20954 Species: Natronomonas pharaonis (50%)	2	1336 bp	71.48	33.16	100.15
sw_8_scaffold_11906 Species: Natrialba chahannaoensis (50%)	2	1348 bp	62.54	6.53	100.15
sw_8_scaffold_11911 Species: Natrialba hulunbeirensis (100%)	2	1348 bp	48.00	5.93	100.15
sw_8_scaffold_11787 Species: Natronomonas pharaonis (100%)	2	1357 bp	71.26	54.16	100.15
sw_8_scaffold_26112 Species: Halococcus thailandensis (100%)	2	1363 bp	59.21	11.81	100.15
sw_8_scaffold_11440 Species: Haloferax lucentense (50%)	2	1387 bp	63.52	56.67	100.14
sw_8_scaffold_23531	2	1390 bp	64.60	16.62	100.14
sw_8_scaffold_3850 Species: Natronomonas pharaonis (50%)	2	2810 bp	67.15	21.32	100.14
sw_8_scaffold_26122 Species: Salinibacter ruber (100%)	3	1411 bp	64.71	8.58	100.14
sw_8_scaffold_11056 Species: Natronomonas pharaonis (50%)	2	1417 bp	74.24	36.13	100.14

Displaying items 451-500 of 16401 in total

SW_8_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

SW_8_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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