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SW_8_UNK

In projects: SW_8

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 17.32 Longest contig: 151.13 Kbp Bin length: 41.32 Mbp GC content: 58.51 %
Contigs count: 16401 Features count: 53796 rRNAs count: 12 tRNAs count: 452

Genome completeness

megabin RP 51 / 55 MC: 46 BSCG 48 / 51 MC: 40 ASCG 38 / 38 MC: 38
Displaying items 501-550 of 16401 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_8_scaffold_1599 10 5834 bp 51.65 10.13 54.35
sw_8_scaffold_562
Order: Bacteroidetes Order II. Incertae sedis (50%)
10 13226 bp 62.50 46.17 92.68
sw_8_scaffold_1484 10 5071 bp 54.62 9.31 66.50
sw_8_scaffold_1438
Domain: Bacteria (90%)
10 6043 bp 64.24 52.95 76.40
sw_8_scaffold_1738 10 4578 bp 56.73 8.63 85.19
sw_8_scaffold_4708 10 5775 bp 39.67 5.66 83.48
sw_8_scaffold_978 10 6488 bp 64.35 9.62 91.92
sw_8_scaffold_3676 10 4647 bp 37.59 7.19 61.59
sw_8_scaffold_1901 10 10519 bp 59.33 14.64 69.56
sw_8_scaffold_386
Order: Halobacteriales (50%)
10 11373 bp 58.04 19.87 92.40
sw_8_scaffold_2077 10 6131 bp 55.34 10.62 91.16
sw_8_scaffold_1647
Species: Natrinema pellirubrum (60%)
10 6425 bp 53.37 6.86 77.88
sw_8_scaffold_1904 10 7637 bp 56.82 9.21 74.83
sw_8_scaffold_286
Phylum: Bacteroidetes (60%)
10 19890 bp 63.92 42.30 94.19
sw_8_scaffold_1302 10 8397 bp 60.39 13.33 86.21
sw_8_scaffold_1991 10 6987 bp 44.48 8.39 71.66
sw_8_scaffold_387
Domain: Bacteria (70%)
10 11368 bp 63.91 47.36 86.66
sw_8_scaffold_1464 10 5121 bp 58.11 7.81 73.40
sw_8_scaffold_2647 10 4934 bp 55.61 9.26 60.07
sw_8_scaffold_658 10 8735 bp 54.22 9.25 92.01
sw_8_scaffold_3382 10 9295 bp 53.43 9.28 77.11
sw_8_scaffold_1442
Class: Halobacteria (70%)
10 6721 bp 65.17 21.89 78.65
sw_8_scaffold_13039
Phylum: Euryarchaeota (50%)
10 4981 bp 38.51 4.60 89.32
sw_8_scaffold_659 10 9638 bp 53.63 8.28 67.61
sw_8_scaffold_2987 10 8804 bp 56.30 9.19 67.13
sw_8_scaffold_1627 10 9014 bp 57.14 8.90 77.85
sw_8_scaffold_1512 10 8181 bp 52.18 9.22 60.51
sw_8_scaffold_2003 10 7671 bp 53.92 8.63 71.41
sw_8_scaffold_983
Species: Salinibacter ruber (90%)
10 9950 bp 61.95 45.46 87.53
sw_8_scaffold_409
Domain: Bacteria (60%)
10 11584 bp 63.05 43.51 89.55
sw_8_scaffold_4094 10 7104 bp 55.39 12.91 71.07
sw_8_scaffold_2094 10 12096 bp 39.72 6.61 91.74
sw_8_scaffold_3551
Class: Halobacteria (70%)
10 5191 bp 57.77 11.96 78.08
sw_8_scaffold_2778 10 9366 bp 55.25 9.09 60.95
sw_8_scaffold_915
Order: Haloferacales (50%)
10 9493 bp 58.24 19.57 82.58
sw_8_scaffold_5699
Species: Salinibacter ruber (70%)
10 6672 bp 61.33 11.29 72.39
sw_8_scaffold_1123 10 9818 bp 56.08 8.75 89.50
sw_8_scaffold_1653
Domain: Bacteria (60%)
10 6917 bp 50.59 23.91 76.29
sw_8_scaffold_4107
Order: Halobacteriales (50%)
10 5063 bp 61.84 22.28 58.82
sw_8_scaffold_1031
Class: Halobacteria (80%)
10 7728 bp 51.93 8.28 80.01
sw_8_scaffold_1101 10 10315 bp 55.08 8.97 64.92
sw_8_scaffold_1631
Class: Halobacteria (70%)
10 5343 bp 55.36 12.95 89.99
sw_8_scaffold_1032 10 9293 bp 55.78 9.48 82.74
sw_8_scaffold_17926 10 4232 bp 40.81 80.43 89.79
sw_8_scaffold_3740
Class: Halobacteria (70%)
10 5915 bp 53.85 6.73 89.37
sw_8_scaffold_4564 10 6487 bp 55.20 9.56 59.20
sw_8_scaffold_4797
Order: Halobacteriales (50%)
10 9121 bp 68.00 41.56 60.42
sw_8_scaffold_1148 10 5882 bp 54.57 9.79 82.11
sw_8_scaffold_3012
Species: Salinibacter ruber (50%)
10 8329 bp 63.42 42.96 85.04
sw_8_scaffold_1333 10 9100 bp 54.84 12.02 76.81
Displaying items 501-550 of 16401 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.