ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 17.32 Longest contig: 151.13 Kbp Bin length: 41.32 Mbp GC content: 58.51 %

Contigs count: 16401 Features count: 53796 rRNAs count: 12 tRNAs count: 452

Genome completeness

megabin RP 51 / 55 MC: 46 BSCG 48 / 51 MC: 40 ASCG 38 / 38 MC: 38

Displaying items 351-400 of 16401 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
sw_8_scaffold_13637 Species: Haloquadratum walsbyi (100%)	2	1229 bp	65.58	11.07	100.33
sw_8_scaffold_6674 Class: Halobacteria (66.67%)	3	3693 bp	65.18	48.23	100.33
sw_8_scaffold_15999 Species: Halococcus salifodinae (100%)	3	1597 bp	71.13	23.23	100.31
sw_8_scaffold_18099 Species: Salinibacter ruber (100%)	2	1917 bp	64.21	9.86	100.31
sw_8_scaffold_12746 Species: halophilic archaeon J07HX64 (100%)	2	1286 bp	58.63	6.22	100.31
sw_8_scaffold_12449	3	1307 bp	45.98	6.58	100.31
sw_8_scaffold_12266 Species: Salinibacter ruber (100%)	2	1322 bp	63.31	13.54	100.30
sw_8_scaffold_4193 Genus: Halococcus (100%)	3	2662 bp	63.15	9.02	100.30
sw_8_scaffold_7508 Species: Natrinema altunense (50%)	2	2333 bp	65.92	29.88	100.30
sw_8_scaffold_18204 Species: Halorhabdus utahensis (50%)	2	1005 bp	72.94	15.42	100.30
sw_8_scaffold_18208 Species: halophilic archaeon DL31 (50%)	2	1005 bp	70.25	10.85	100.30
sw_8_scaffold_18209 Species: Halomicrobium mukohataei (50%)	2	1005 bp	69.15	10.75	100.30
sw_8_scaffold_18195	2	1005 bp	62.69	7.26	100.30
sw_8_scaffold_17898 Species: Haloquadratum walsbyi (100%)	2	1017 bp	63.72	9.05	100.30
sw_8_scaffold_20068 Species: Haloterrigena turkmenica (50%)	2	1367 bp	67.45	8.49	100.29
sw_8_scaffold_17527 Species: Halococcus saccharolyticus (50%)	2	1032 bp	53.88	4.65	100.29
sw_8_scaffold_17467 Species: Haloarcula vallismortis (50%)	2	1035 bp	53.04	7.34	100.29
sw_8_scaffold_17253 Species: Halomicrobium mukohataei (50%)	2	1044 bp	70.88	13.31	100.29
sw_8_scaffold_17117 Species: Natronomonas pharaonis (50%)	2	1050 bp	73.43	24.48	100.29
sw_8_scaffold_17121 Species: Halococcus salifodinae (100%)	2	1050 bp	68.86	17.71	100.29
sw_8_scaffold_16978 Species: Natronomonas pharaonis (50%)	2	1056 bp	73.77	19.41	100.28
sw_8_scaffold_30901 Species: Natronomonas pharaonis (100%)	2	1065 bp	69.20	64.88	100.28
sw_8_scaffold_16777 Species: Salinibacter ruber (100%)	2	1065 bp	64.13	6.38	100.28
sw_8_scaffold_11028 Species: Halococcus salifodinae (100%)	2	1421 bp	70.16	18.58	100.28
sw_8_scaffold_16637 Species: Natronomonas moolapensis (100%)	2	1071 bp	73.48	24.09	100.28
sw_8_scaffold_5845 Order: Halobacteriales (100%)	3	2148 bp	67.74	13.27	100.28
sw_8_scaffold_10886	2	1433 bp	53.59	7.96	100.28
sw_8_scaffold_16389 Species: halophilic archaeon J07HX5 (100%)	2	1083 bp	74.24	10.25	100.28
sw_8_scaffold_16396 Species: Desulfohalobium retbaense (50%)	2	1083 bp	68.05	9.79	100.28
sw_8_scaffold_5474 Genus: Haloferax (66.67%)	3	2902 bp	63.71	35.91	100.28
sw_8_scaffold_16199 Species: Halococcus salifodinae (50%)	2	1092 bp	62.00	5.22	100.28
sw_8_scaffold_15868 Species: Halorhabdus tiamatea (50%)	2	1107 bp	67.75	12.83	100.27
sw_8_scaffold_15871 Species: halophilic archaeon DL31 (50%)	2	1107 bp	61.79	5.42	100.27
sw_8_scaffold_34115 Species: Natrinema pellirubrum (66.67%)	3	1110 bp	63.06	101.80	100.27
sw_8_scaffold_15506 Species: Halorhabdus utahensis (50%)	2	1125 bp	66.22	17.42	100.27
sw_8_scaffold_15510 Species: Haloarcula hispanica (100%)	2	1125 bp	64.18	6.84	100.27
sw_8_scaffold_26465 Species: Halococcus salifodinae (50%)	2	1125 bp	70.67	17.33	100.27
sw_8_scaffold_15401	3	1131 bp	38.37	2.65	100.27
sw_8_scaffold_10384 Phylum: Euryarchaeota (66.67%)	3	2280 bp	60.31	17.24	100.26
sw_8_scaffold_15020 Species: Natronomonas moolapensis (80%)	5	1149 bp	70.84	51.96	100.26
sw_8_scaffold_14794 Species: Haloterrigena salina (50%)	2	1161 bp	77.52	50.65	100.26
sw_8_scaffold_11824 Species: Halococcus saccharolyticus (60%)	5	1936 bp	66.89	14.46	100.26
sw_8_scaffold_26869 Species: Halomicrobium mukohataei (50%)	4	1164 bp	69.85	26.12	100.26
sw_8_scaffold_14682 Species: Halomicrobium mukohataei (50%)	2	1167 bp	73.52	12.94	100.26
sw_8_scaffold_14478	2	1179 bp	59.80	8.91	100.25
sw_8_scaffold_14407 Species: Halogeometricum pallidum (50%)	2	1182 bp	71.07	11.00	100.25
sw_8_scaffold_14408 Species: halophilic archaeon J07HB67 (50%)	2	1182 bp	65.06	26.14	100.25
sw_8_scaffold_14348 Species: Salinarchaeum sp. Harcht-Bsk1 (50%)	2	1185 bp	71.05	17.05	100.25
sw_8_scaffold_9338 Species: Halovivax ruber (50%)	2	1586 bp	69.86	17.40	100.25
sw_8_scaffold_9343 Species: Candidatus Halobonum tyrrellensis (50%)	2	1586 bp	70.49	32.16	100.25

Displaying items 351-400 of 16401 in total

SW_8_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

SW_8_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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