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SW_9_UNK

In projects: SW_9  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 18.95 Longest contig: 153.78 Kbp Bin length: 52.88 Mbp GC content: 60.44 %
Contigs count: 21657 Features count: 72021 rRNAs count: 14 tRNAs count: 753

Genome completeness

partial RP 46 / 55 MC: 39 BSCG 39 / 51 MC: 36 ASCG 38 / 38 MC: 38
Displaying items 21151-21200 of 21657 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_9_scaffold_17965 2 1154 bp 48.53 4.33 42.89
sw_9_scaffold_13594 3 2081 bp 35.13 4.32 86.21
sw_9_scaffold_29283 3 1784 bp 57.79 4.32 82.57
sw_9_scaffold_8425
Species: Caldalkalibacillus thermarum (50%)
2 1851 bp 56.35 4.32 54.30
sw_9_scaffold_21697 3 1019 bp 38.67 4.32 88.62
sw_9_scaffold_12789 3 1435 bp 41.11 4.32 68.36
sw_9_scaffold_13105 1 1412 bp 55.59 4.32 87.96
sw_9_scaffold_38600 2 1065 bp 42.54 4.32 100.56
sw_9_scaffold_5626
Species: Halococcus hamelinensis (50%)
2 2318 bp 39.52 4.31 98.10
sw_9_scaffold_17365 3 1182 bp 41.37 4.31 96.19
sw_9_scaffold_17868 3 1159 bp 47.11 4.31 100.17
sw_9_scaffold_26885
Phylum: Cyanobacteria (66.67%)
3 1463 bp 42.17 4.31 45.52
sw_9_scaffold_15384
Species: Thalassiosira pseudonana (100%)
1 1277 bp 53.95 4.31 75.88
sw_9_scaffold_21610
Species: Halovivax asiaticus (50%)
2 1021 bp 38.88 4.31 74.05
sw_9_scaffold_16321
Species: Natronorubrum tibetense (100%)
2 1230 bp 41.38 4.31 83.41
sw_9_scaffold_9758
Species: Paenibacillus curdlanolyticus (50%)
2 1695 bp 58.58 4.31 100.18
sw_9_scaffold_18422 3 1137 bp 47.41 4.31 108.44
sw_9_scaffold_17783 3 1163 bp 41.87 4.30 74.81
sw_9_scaffold_13706
Species: marine sediment metagenome (50%)
2 1373 bp 41.66 4.30 96.80
sw_9_scaffold_16278
Species: R_Fluviicola_43_260 (50%)
2 1232 bp 47.32 4.30 93.26
sw_9_scaffold_12391
Species: Pedobacter sp. V48 (50%)
2 1465 bp 40.07 4.30 102.18
sw_9_scaffold_11489 3 1534 bp 56.13 4.30 62.58
sw_9_scaffold_11745
Species: Agrobacterium tumefaciens (50%)
2 1512 bp 37.90 4.30 82.54
sw_9_scaffold_20081 3 2120 bp 42.08 4.29 89.72
sw_9_scaffold_22211 3 1002 bp 41.72 4.29 47.70
sw_9_scaffold_20627
Species: Salinibacter ruber (66.67%)
3 2356 bp 52.08 4.29 73.22
sw_9_scaffold_29792
Species: Niastella koreensis (100%)
1 1609 bp 43.38 4.29 76.63
sw_9_scaffold_17206 1 1189 bp 36.92 4.29 56.01
sw_9_scaffold_17219
Species: Pleurocapsa minor (50%)
2 1188 bp 50.93 4.29 96.97
sw_9_scaffold_7943
Species: Gloeocapsa sp. PCC 7428 (100%)
2 1918 bp 53.08 4.28 99.01
sw_9_scaffold_19416 1 1099 bp 40.86 4.28 73.98
sw_9_scaffold_19424
Species: Halobacterium sp. DL1 (100%)
2 1099 bp 51.32 4.28 86.81
sw_9_scaffold_37876 1 1403 bp 37.78 4.28 45.33
sw_9_scaffold_28565
Species: RBG_16_Zixibacteria_53_22_curated (50%)
2 1753 bp 50.83 4.28 44.15
sw_9_scaffold_17873
Species: Methanosarcina siciliae (50%)
2 2103 bp 37.38 4.28 95.15
sw_9_scaffold_13981 4 1356 bp 40.63 4.28 88.50
sw_9_scaffold_12611
Species: Halomicrobium mukohataei (50%)
2 1449 bp 38.44 4.28 87.16
sw_9_scaffold_14014
Species: Parcubacteria bacterium GW2011_GWF2_39_8b (50%)
2 1354 bp 46.68 4.28 94.17
sw_9_scaffold_19821
Class: Halobacteria (100%)
3 2249 bp 45.66 4.27 53.62
sw_9_scaffold_19394 1 1100 bp 56.73 4.27 87.27
sw_9_scaffold_18785 3 1123 bp 60.28 4.27 89.23
sw_9_scaffold_18801 3 1123 bp 39.18 4.27 67.05
sw_9_scaffold_22030
Species: halophilic archaeon J07HX5 (50%)
2 1008 bp 54.66 4.27 79.17
sw_9_scaffold_18130 2 1148 bp 45.64 4.27 25.61
sw_9_scaffold_41171
Species: GWA2_Bacteroidetes_30_7_curated (50%)
2 1125 bp 40.36 4.27 102.40
sw_9_scaffold_9578 4 1715 bp 45.36 4.26 93.94
sw_9_scaffold_12520
Species: Halosimplex carlsbadense (50%)
2 1455 bp 38.69 4.26 66.19
sw_9_scaffold_11884
Species: Natrinema pellirubrum (50%)
2 1502 bp 41.88 4.26 59.72
sw_9_scaffold_7376
Order: Haloferacales (66.67%)
3 3971 bp 37.95 4.26 40.80
sw_9_scaffold_13529 2 1384 bp 55.85 4.26 85.40
Displaying items 21151-21200 of 21657 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.