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SW_11_UNK

In projects: SW_11  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 18.10 Longest contig: 206.16 Kbp Bin length: 36.83 Mbp GC content: 60.58 %
Contigs count: 13823 Features count: 48125 rRNAs count: 12 tRNAs count: 554

Genome completeness

megabin RP 48 / 55 MC: 40 BSCG 43 / 51 MC: 37 ASCG 38 / 38 MC: 38
Displaying items 751-800 of 13823 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_11_scaffold_15534 1 1030 bp 46.80 5.15 59.42
sw_11_scaffold_12543 1 1205 bp 51.95 5.15 86.89
sw_11_scaffold_13475
Species: Natronolimnobius innermongolicus (100%)
1 1145 bp 41.83 5.15 99.83
sw_11_scaffold_15551 1 1030 bp 40.49 5.15 48.93
sw_11_scaffold_8411 3 1611 bp 54.75 5.15 74.86
sw_11_scaffold_15151 3 1049 bp 60.15 5.15 100.95
sw_11_scaffold_20290
Species: Chondrus crispus (50%)
2 2016 bp 50.00 5.16 37.80
sw_11_scaffold_5281 6 2230 bp 39.78 5.16 90.67
sw_11_scaffold_13838
Species: Salinibacter ruber (100%)
2 1124 bp 56.58 5.16 82.74
sw_11_scaffold_10236
Order: Flavobacteriales (66.67%)
3 1395 bp 51.25 5.16 99.57
sw_11_scaffold_10238
Species: Salinibacter ruber (100%)
2 1395 bp 54.62 5.16 70.97
sw_11_scaffold_5630
Species: Naegleria gruberi (100%)
3 2131 bp 27.97 5.16 91.51
sw_11_scaffold_16019
Species: CSP1_5_NC10 (50%)
2 1008 bp 58.23 5.16 58.04
sw_11_scaffold_13490
Species: Paraglaciecola polaris (50%)
2 1144 bp 53.93 5.16 103.58
sw_11_scaffold_9557 3 1472 bp 57.54 5.16 89.27
sw_11_scaffold_17388 2 1821 bp 51.29 5.16 36.90
sw_11_scaffold_14466 1 1085 bp 51.24 5.16 99.82
sw_11_scaffold_7783
Species: Thioalkalivibrio nitratireducens (50%)
2 1703 bp 42.10 5.17 97.94
sw_11_scaffold_15645 3 1994 bp 57.82 5.17 102.61
sw_11_scaffold_28865 3 1237 bp 49.15 5.17 91.43
sw_11_scaffold_6675 3 1896 bp 54.75 5.17 78.32
sw_11_scaffold_15235
Species: Algoriphagus machipongonensis (50%)
2 1045 bp 34.07 5.17 99.62
sw_11_scaffold_16159 1 1625 bp 44.31 5.17 25.48
sw_11_scaffold_15238
Species: [Clostridium] termitidis (100%)
1 1045 bp 39.33 5.17 84.40
sw_11_scaffold_12943
Species: delta proteobacterium MLMS-1 (100%)
1 1179 bp 54.71 5.17 74.55
sw_11_scaffold_15259 1 1044 bp 51.72 5.17 55.17
sw_11_scaffold_22807
Species: Acanthamoeba castellanii (100%)
1 1510 bp 51.52 5.17 99.93
sw_11_scaffold_10900 3 1334 bp 35.76 5.17 80.51
sw_11_scaffold_19848
Species: Halococcus thailandensis (50%)
2 1568 bp 52.55 5.17 109.82
sw_11_scaffold_8166
Species: Naegleria gruberi (50%)
2 1645 bp 28.02 5.17 53.98
sw_11_scaffold_14195
Species: RBG_16_RIF_WS3X_71_46_curated (50%)
2 1103 bp 34.27 5.17 91.66
sw_11_scaffold_21065 1 1781 bp 53.79 5.17 19.71
sw_11_scaffold_16066
Species: Halogeometricum borinquense (50%)
2 1006 bp 54.67 5.17 71.27
sw_11_scaffold_13076 2 1664 bp 50.78 5.17 54.63
sw_11_scaffold_13548 2 1142 bp 54.90 5.17 86.69
sw_11_scaffold_13589
Species: Salinibacter ruber (100%)
1 1139 bp 60.49 5.18 99.82
sw_11_scaffold_8964
Species: Mesorhizobium amorphae (50%)
2 1543 bp 36.49 5.18 85.35
sw_11_scaffold_15666
Phylum: Proteobacteria (66.67%)
3 1023 bp 53.47 5.18 73.61
sw_11_scaffold_14780 2 2064 bp 33.82 5.18 48.84
sw_11_scaffold_11809 1 1256 bp 60.75 5.18 78.82
sw_11_scaffold_15274 2 1043 bp 32.79 5.18 96.07
sw_11_scaffold_13902 1 1120 bp 41.25 5.18 75.27
sw_11_scaffold_11846
Species: Mucilaginibacter paludis (100%)
1 1254 bp 44.26 5.18 91.63
sw_11_scaffold_13269 1 1159 bp 51.34 5.18 55.13
sw_11_scaffold_2844 5 3357 bp 48.17 5.18 86.24
sw_11_scaffold_14904
Species: Natrinema sp. J7-2 (50%)
2 1062 bp 48.59 5.18 69.77
sw_11_scaffold_14920 1 1061 bp 52.78 5.18 99.81
sw_11_scaffold_11268 1 2041 bp 50.96 5.19 44.39
sw_11_scaffold_5750 5 2101 bp 51.83 5.19 100.52
sw_11_scaffold_12107 2 1234 bp 36.47 5.19 99.68
Displaying items 751-800 of 13823 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.