Value | Algorithm | Source | Identity | Coverage | Bit score | Evalue | Cross references |
---|---|---|---|---|---|---|---|
RNA polymerase, sigma 38 subunit, RpoS | similarity |
KEGG
DB: KEGG |
59.1 | 372.0 | 410 | 7.10e-112 | ccl:Clocl_2118 |
seg (db=Seg db_id=seg from=374 to=386) | iprscan |
interpro
DB: Seg |
null | null | null | null | ccl:Clocl_2118 |
seg (db=Seg db_id=seg from=97 to=113) | iprscan |
interpro
DB: Seg |
null | null | null | null | ccl:Clocl_2118 |
seg (db=Seg db_id=seg from=131 to=156) | iprscan |
interpro
DB: Seg |
null | null | null | null | ccl:Clocl_2118 |
seg (db=Seg db_id=seg from=175 to=189) | iprscan |
interpro
DB: Seg |
null | null | null | null | ccl:Clocl_2118 |
coiled-coil (db=Coil db_id=coil from=131 to=162 evalue=NA) | iprscan |
interpro
DB: Coil |
null | null | null | null | ccl:Clocl_2118 |
seg (db=Seg db_id=seg from=2 to=83) | iprscan |
interpro
DB: Seg |
null | null | null | null | ccl:Clocl_2118 |
SIGMA70_2 (db=PatternScan db_id=PS00716 from=437 to=463 evalue=0.0 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: PatternScan |
null | null | null | 0.0 | ccl:Clocl_2118 |
SIGMA70_1 (db=PatternScan db_id=PS00715 from=267 to=280 evalue=0.0 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: PatternScan |
null | null | null | 0.0 | ccl:Clocl_2118 |
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=202 to=313 evalue=8.3e-52 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: superfamily |
null | null | null | 8.30e-52 | ccl:Clocl_2118 |
no description (db=Gene3D db_id=G3DSA:1.10.601.10 from=205 to=312 evalue=1.0e-49) | iprscan |
interpro
DB: Gene3D |
null | null | null | 1.00e-49 | ccl:Clocl_2118 |
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=2 to=310 evalue=1.4e-45 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: superfamily |
null | null | null | 1.40e-45 | ccl:Clocl_2118 |
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=437 to=452 evalue=2.3e-30 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
null | null | null | 2.30e-30 | ccl:Clocl_2118 |
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=416 to=428 evalue=2.3e-30 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
null | null | null | 2.30e-30 | ccl:Clocl_2118 |
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=291 to=299 evalue=2.3e-30 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
null | null | null | 2.30e-30 | ccl:Clocl_2118 |
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=452 to=463 evalue=2.3e-30 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
null | null | null | 2.30e-30 | ccl:Clocl_2118 |
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=267 to=280 evalue=2.3e-30 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
null | null | null | 2.30e-30 | ccl:Clocl_2118 |
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=236 to=467 evalue=2.5e-26 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMTigr |
null | null | null | 2.50e-26 | ccl:Clocl_2118 |
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=398 to=475 evalue=1.7e-22 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding) | iprscan |
interpro
DB: Gene3D |
null | null | null | 1.70e-22 | ccl:Clocl_2118 |
Sigma70_r2 (db=HMMPfam db_id=PF04542 from=241 to=313 evalue=3.4e-22 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 3.40e-22 | ccl:Clocl_2118 |
Sigma70_r3 (db=HMMPfam db_id=PF04539 from=322 to=398 evalue=6.9e-22 interpro_id=IPR007624 interpro_description=RNA polymerase sigma-70 region 3 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 6.90e-22 | ccl:Clocl_2118 |
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=316 to=391 evalue=7.2e-22 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: superfamily |
null | null | null | 7.20e-22 | ccl:Clocl_2118 |
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=374 to=467 evalue=1.2e-21 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: superfamily |
null | null | null | 1.20e-21 | ccl:Clocl_2118 |
Sigma70_r4 (db=HMMPfam db_id=PF04545 from=412 to=465 evalue=1.6e-17 interpro_id=IPR007630 interpro_description=RNA polymerase sigma-70 region 4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 1.60e-17 | ccl:Clocl_2118 |
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=316 to=367 evalue=9.3e-17 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding) | iprscan |
interpro
DB: Gene3D |
null | null | null | 9.30e-17 | ccl:Clocl_2118 |
Sigma70_r1_2 (db=HMMPfam db_id=PF00140 from=202 to=238 evalue=2.6e-15 interpro_id=IPR009042 interpro_description=RNA polymerase sigma-70 region 1.2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 2.60e-15 | ccl:Clocl_2118 |
Sigma70_r1_1 (db=HMMPfam db_id=PF03979 from=116 to=178 evalue=7.1e-09 interpro_id=IPR007127 interpro_description=RNA polymerase sigma factor 70, region 1.1 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription regulator activity (GO:0030528), Biological Process: regulation of transcription (GO:0045449)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 7.10e-09 | ccl:Clocl_2118 |
RNA polymerase, sigma 70 subunit, RpoD subfamily; K03086 RNA polymerase primary sigma factor alias=ACD1_C00053G00020,ACDUNK_406.23370.88G0020,ACDUNK_406.23370.88_20 id=17196 tax=ACD1 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes organism_group=OD1-i organism_desc=OD1-i | similarity |
UNIREF
DB: UNIREF90 |
100.0 | null | 911 | 1.40e-262 | ccl:Clocl_2118 |
RNA polymerase sigma factor {ECO:0000313|EMBL:KKQ46300.1}; TaxID=1618698 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Moranbacteria) bacterium GW2011_GWC2_37_82.;" |
UNIPROT
DB: UniProtKB |
82.0 | 490.0 | 747 | 1.60e-212 | A0A0G0I5Q5_9BACT |